Dannon Baker
623a5e165a
Apply black formatting.
...
Apply isort.
2022-02-03 07:42:20 -05:00
Nicola Soranzo
9d74bba7fb
Drop support for retired Python 3.5
...
Upgrade syntax using `pyupgrade --py36-plus` .
Manually drop several `six` imports.
Also:
- Remove broken pr_cache in scripts/bootstrap_history.py
- Fix broken prefix removal in lib/galaxy/tool_util/deps/mulled/mulled_build.py
2020-10-07 11:52:13 +01:00
Nicola Soranzo
9b1832abb1
Fix import order for cron/, scripts/ and test/
2017-09-25 23:44:39 +01:00
E Rasche
15c73233c5
fix lint
2017-09-25 11:39:15 +02:00
E Rasche
290971ca7a
more review comments
2017-09-25 11:39:15 +02:00
E Rasche
9b8e76f9d9
Convert urllib to requests
...
Which has built-in protection against urls like "file:///tmp/a"
2017-09-25 11:39:13 +02:00
Nicola Soranzo
21b44bf348
Fix all E201 and E202 style errors
...
using the following command:
```
autopep8 -i -r --exclude $(sed -e 's|^|./|' -e 's|/$||' .ci/flake8_blacklist.txt | paste -sd,) --select E201,E202 .
```
2017-08-17 11:35:39 +01:00
Nicola Soranzo
d85db9daa6
Use __file__ when adding paths to sys.path instead of os.getcwd() .
...
Also insert additional paths in position 1 unless strictly necessary.
2016-02-18 15:45:15 +00:00
Nicola Soranzo
34d9388456
Use os.pardir everywhere instead of '..' .
2015-07-14 16:20:29 +01:00
Nicola Soranzo
6569c2dcc3
Partially lint scripts/ .
2015-07-13 20:13:28 +01:00
John Chilton
08e2c351d9
Add edam formats to most Galaxy datatypes and a script for producing a mapping.
...
See notes in scripts/edam_mapping.py for more information on mapping.
This is based on mapping of terms done by Eric Rasche (@erasche) (in galaxyproject/galaxy#80 ) and by the team at Pasteur including @hmenager, @fmareuil, and @odoppelt (in https://docs.google.com/spreadsheets/d/1vptTpJvQfb5FOtRJOajjftUkL9aZ0eeVdhUPvd9h5wY/edit#gid=0 ).
Current mapping at time of commit is https://gist.github.com/jmchilton/73cd540d7a08488843d7 .
2015-05-16 16:47:39 -04:00
Dannon Baker