Nicola Soranzo
14e3ae32ed
Restore GET /api/categories/<encoded_id> in ToolShed 2.0
...
and the deleted field in the response.
Rationale: it is not particularly useful, but both:
GET /api/categories
GET /api/categories/<encoded_id>/repositories
work on TS 2.0, so it's weird that this one is missing.
Also, it was breaking BioBlend's
https://bioblend.readthedocs.io/en/latest/api_docs/toolshed/all.html#bioblend.toolshed.categories.ToolShedCategoryClient.show_category
2023-10-20 11:14:30 +01:00
John Chilton
76c560fc95
Initial bug fixes for tool shed 2.
2023-10-04 14:02:01 -04:00
John Chilton
7dc0b1378b
WIP: modern tool shed frontend
2023-09-27 14:30:42 -04:00
John Chilton
dd58bfcfe6
Implement the GA4GH TRS API in the new tool shed.
2023-09-26 13:46:59 -04:00
John Chilton
d1d629074b
ToolShed API 2.0
2023-09-26 13:46:58 -04:00
John Chilton
cdf8193b8a
Improve tool shed API client schema.
2023-09-26 13:46:58 -04:00
John Chilton
85100edff0
Tool Shed API Modernization ahead of FastAPI
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- Use the controller base that allow DI.
- Move a bunch functionality we want to port to FastAPI into manage layer.
- Some typing enhancements.
2023-09-26 13:46:57 -04:00
John Chilton
59cff45fb1
Decompose tool shed + schema package.
...
This commit creates two new packages - below a description of these packages and why they are being created.
galaxy-schema: This package contains the pydantic models that power the API. The purpose of packaging them is to ensure they can be reused by clients with minimal external dependencies. Reusing the schema in client code would very quickly provide rapid documentation and validation and static checking for Python clients using the Galaxy API.
galaxy-tool-shed: This package contains the tool shed server code. This has been a long term project to allow the tool shed to be spun out but maintain real galaxy dependencies and maintain testing. More discussions around this project can be found as part of https://github.com/galaxyproject/galaxy/pull/8830 .
2023-09-26 13:46:55 -04:00
Nicola Soranzo
d6d6dc1bed
Fix for ruff UP013 error
2023-06-25 18:33:39 +01:00
John Chilton
42a29e04c5
Schema for by categories...
2023-04-08 16:34:05 -04:00
John Chilton
6b3a2d3cd6
Enhance schema models.
2023-02-03 13:47:38 -05:00
John Chilton
808eca05bd
Use API repository object instead of database object in dozens of spots in tool shed functional tests.
2022-09-24 08:42:23 -04:00
John Chilton
fabd33ee19
Add more repository index pydantic typing.
2022-09-24 08:41:43 -04:00
John Chilton
cec8c1ac9f
Use API in lieu of direct db access in shed functional tests for categories.
2022-09-20 18:25:47 -04:00
John Chilton
f8c1c11016
API tests for tool shed search APIs.
2022-09-14 09:31:27 -04:00
John Chilton
e5bbad2f36
Flush out pydantic models for tool shed metadata.
2022-09-14 09:31:25 -04:00
John Chilton
fc8938fb67
More API tests for the tool shed.
...
Continue working toward a set of pydantic models to rapidly move toward FastAPI/OpenAPI also.
2022-08-31 13:32:00 -04:00
John Chilton
12b34ff47c
API tests for the tool shed.
2022-08-29 09:51:20 -04:00
Nicola Soranzo