 John Chilton
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daa30ee838
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Replace toolshed util symlink with package safe re-export.
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2019-11-10 21:27:31 -05:00 |
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dglaetzer
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0ca1550903
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Merge remote-tracking branch 'upstream/dev' into dev
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2019-07-06 16:50:11 +02:00 |
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damian
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54d2ca01f8
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moved common_util.py, encoding_util.py and xml_util.py from tool_shed/util to galaxy/util/tool_shed (for data package)
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2019-07-06 13:58:52 +02:00 |
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Nicola Soranzo
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df8abbe3ef
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Prefer unicodify() for binary-to-text conversion
which supports non-utf-8 encodings.
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2018-08-21 12:35:05 +01:00 |
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mvdbeek
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ae3d41924a
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py3: Fix repository installation
I'm very surprised this actually worked. I suppose we called my system's
`hg` ?!
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2018-08-14 14:56:06 +02:00 |
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Nicola Soranzo
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39b70d7193
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Python3 Unicode/binary fixes
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2018-06-13 03:12:45 +01:00 |
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Nicola Soranzo
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21b44bf348
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Fix all E201 and E202 style errors
using the following command:
```
autopep8 -i -r --exclude $(sed -e 's|^|./|' -e 's|/$||' .ci/flake8_blacklist.txt | paste -sd,) --select E201,E202 .
```
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2017-08-17 11:35:39 +01:00 |
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Nicola Soranzo
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587d450402
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Fix installation of Tool Shed repositories containing non-ASCII characters in the description. Fix #1702.
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2016-02-18 17:44:08 +00:00 |
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Nicola Soranzo
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df808d0c1e
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flake8 lib/tool_shed/ .
Also:
- use sys.exit() instead of exit()
- fix sys.path manipulations.
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2015-09-09 19:57:41 +01:00 |
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Greg Von Kuster
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7bdb8a06fb
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Handle combinations of newly defined tool dependencies and repository dependencies that are included in updates being pulled to tool shed repositories installed into Galaxy.
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2014-03-26 14:58:08 -04:00 |
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Dannon Baker
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559ecb4ec8
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Remove dependency on simplejson; convert everything over to using the json module in the python standard library.
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2014-01-10 07:29:05 -05:00 |
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Greg Von Kuster
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1caf2ba5aa
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Enhance the Galaxy tool migration framework to support restricted repository dependency definitions. Repository dependency definitions contained in repositories that contain tools migrated from the Galaxy code base cannot define a dependency to a repository that contains a tool at any level of the dependency hierarchy.
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2013-08-26 09:57:18 -04:00 |
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Greg Von Kuster
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af13035734
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Fix for displaying the appropriate page when installing tool shed repositories into Galxy.
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2013-04-18 10:19:39 -04:00 |
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Greg Von Kuster
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fa3b6691a6
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Fix tool shed utility file imports and withe space to follow new Galaxy dev team coding standards.
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2013-03-26 11:41:49 -04:00 |
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Greg Von Kuster
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280125ee99
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Move ~/lib/galaxy/tool_shed to ~/lib/tool_shed, and move the ~/lib/galaxy/util/shed_util componets to ~/lib/tool_shed/util.
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2013-02-26 15:52:51 -05:00 |
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