 Nicola Soranzo
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4e7763d846
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Add type annotations. Drop unused functions and re-exports.
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2023-10-20 11:14:31 +01:00 |
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Nicola Soranzo
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b85f2f10fa
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Fix get_users_with_repo_alert() call
Introduced in commit 1711e96dac .
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2023-10-20 11:14:31 +01:00 |
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John Davis
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9c8d18fc2c
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Fix bug in SA statement: desc() applied to column, not statement
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2023-10-19 10:39:25 -04:00 |
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John Davis
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bf919c049c
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Fix SA2.0 usage in tool_shed.util.repository_util
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2023-10-12 13:12:23 -04:00 |
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John Davis
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43500cf656
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Fix SA2.0 usage in tool_shed.util.commit_util
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2023-10-12 10:57:59 -04:00 |
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John Davis
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b064064387
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Fix SA2.0 usage in tool_shed.util.search_util
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2023-10-12 10:57:59 -04:00 |
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John Davis
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d4a0cce034
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Fix SA2.0 usage in tool_shed.util.shed_index
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2023-10-12 10:57:59 -04:00 |
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John Davis
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1711e96dac
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Fix SA2.0 usage in tool_shed.util.shed_util_common
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2023-10-12 10:57:59 -04:00 |
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John Davis
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a5a7d0675d
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Fix SA2.0 usage in tool_shed.util.metadata_util
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2023-10-12 10:57:59 -04:00 |
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John Davis
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a127685205
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Improve function names for current users, groups, roles
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2023-10-04 23:43:38 -04:00 |
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John Davis
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fa07e87eae
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Optimize checking existing group by name
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2023-10-04 23:43:38 -04:00 |
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John Davis
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316afb0b1d
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Optimize checking for existing role by name
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2023-10-04 23:43:38 -04:00 |
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John Davis
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ce9cdc9c29
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Optimize email autocomplete string
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2023-10-04 23:43:38 -04:00 |
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John Davis
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e7884f2ea4
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Fix SA2.0 usage in tool_shed.util.admin_util
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2023-10-04 23:43:38 -04:00 |
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John Chilton
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7dc0b1378b
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WIP: modern tool shed frontend
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2023-09-27 14:30:42 -04:00 |
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John Chilton
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04e75635f5
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Option config_hg_for_dev...
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2023-09-26 13:47:00 -04:00 |
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John Chilton
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d1d629074b
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ToolShed API 2.0
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2023-09-26 13:46:58 -04:00 |
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John Chilton
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698d58eed4
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WIP: Implement dry_run in upload API.
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2023-09-26 13:46:58 -04:00 |
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John Chilton
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bb468a28cd
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Less encoding in toolshed app to adapt to functions...
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2023-09-26 13:46:57 -04:00 |
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John Chilton
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9e7fafb8a5
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Remove contact owner functionality from the tool shed - use github please.
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2023-09-26 13:46:57 -04:00 |
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John Chilton
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5a4e950f08
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metadata_generator: Typing has improved to the point that we can annotate this.
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2023-09-26 13:46:56 -04:00 |
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John Chilton
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55564b67d7
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Remove upload_point upload logic in tool shed.
Not used by planemo and not tested by any tests.
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2023-09-26 13:46:56 -04:00 |
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John Chilton
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b66a0bc175
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More integration-y unit tests for tool shed...
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2023-09-26 13:46:56 -04:00 |
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John Chilton
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8852f0733b
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Progress toward exercising less of the tool shed upload API.
So we can kill it.
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2023-09-26 13:46:56 -04:00 |
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John Chilton
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2fa165781b
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Use repository manager to capture more of the upload process.
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2023-09-26 13:46:55 -04:00 |
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John Chilton
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e611a9566a
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Move generate_clone_url_for_repository_in_tool_shed into tool shed.
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2023-09-26 13:46:55 -04:00 |
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John Chilton
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10ce48780b
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Refactor a tool_shed-only utility into tool shed code.
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2023-09-26 13:46:53 -04:00 |
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John Davis
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7a0e66e96c
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Move get_user_by_username function to managers.users
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2023-08-08 00:52:59 -04:00 |
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John Davis
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b4e843cecb
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Fix select([foo]) in lib/tool_shed
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2023-07-19 11:05:55 -04:00 |
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John Davis
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8d2998ffd1
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Wrap session.flush in TS util.admin_util
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2023-06-09 13:05:26 -04:00 |
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John Davis
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c1236c1cba
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Wrap session.flush in TS util.repository_util
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2023-06-09 13:05:26 -04:00 |
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John Davis
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a000f3b929
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Wrap session.flush in TS util.metadata_util
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2023-06-09 13:05:26 -04:00 |
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Martin Cech
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4e8b2fed9b
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Merge pull request #15540 from jmchilton/shed_cleanup_2
Another round of easy tool shed cleanup.
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2023-05-04 18:24:50 -04:00 |
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Nicola Soranzo
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c210257e0d
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Fix new UP031 errors raised by ruff 0.0.262
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2023-05-03 17:57:06 +01:00 |
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Nicola Soranzo
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64af46c4ae
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Fix new B018 errors raised by ruff 0.0.260
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2023-04-13 16:53:01 +01:00 |
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John Chilton
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0a41523a27
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Typing fixes
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2023-04-08 16:34:07 -04:00 |
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John Chilton
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747b291398
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Some initial typing for shed's metadata_util.
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2023-04-08 16:34:06 -04:00 |
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John Chilton
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6aeb297942
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Remove unused code in search_util.
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2023-04-08 16:34:06 -04:00 |
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John Chilton
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79fd5915c3
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More typing for repository_util.
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2023-04-08 16:34:05 -04:00 |
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John Chilton
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18f73b5532
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Some initial type checking for shed_util_common.py
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2023-02-03 13:47:38 -05:00 |
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John Chilton
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5d49042db9
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Remove unused code from shed_util_common.py
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2023-02-03 13:47:38 -05:00 |
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John Chilton
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089d8abf2e
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Interface for tool shed trans...
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2023-02-03 13:47:38 -05:00 |
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John Chilton
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8a74a550bc
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A little cleanup of suc.
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2023-02-03 13:47:38 -05:00 |
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John Chilton
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e0887dce68
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Improved type signature for repository_util.
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2023-02-03 13:47:38 -05:00 |
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John Chilton
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86d5ab6bb3
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Typing for various tool shed utilities.
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2023-02-03 13:47:38 -05:00 |
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John Chilton
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e87697bb9d
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Refactor tool_util only used by tool_shed code into tool_shed.
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2023-02-03 13:47:38 -05:00 |
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John Chilton
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03f3f0ee0a
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Improved dependency imports in readme_util.
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2022-10-17 16:09:55 -04:00 |
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John Davis
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b1c912f179
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Merge pull request #14744 from jmchilton/cleanup_ts_dependency_structure
Small cleanups to shed package dependency structures
(integration test failure unrelated)
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2022-10-07 11:26:42 -04:00 |
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John Chilton
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94c8218d48
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setup service and fastapi layer for tool shed APIs...
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2022-10-01 09:14:03 -04:00 |
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John Chilton
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fe83d9e083
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Move repository_util function into legacy code in only place used.
Eliminates a galaxy -> tool shed import and centralizes legacy code.
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2022-09-30 14:04:26 -04:00 |
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