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70 Commits
Author SHA1 Message Date
Heinz-Alexander FuettererandNicola Soranzo 347e7b8301 chore: fix typos 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2023-10-13 16:29:27 +02:00
Nicola Soranzo 0f70c68fd9 Migrate to MyST-Parser for Markdown docs 
replacing deprecated recommonmark.

Fix https://github.com/galaxyproject/galaxy/issues/13005 .

Also:
- Drop not very useful ``doc/source/dev/file_upload.md`` .
- Small doc and link fixes.
 2023-03-27 15:01:27 +01:00
Nicola Soranzo d8986239a1 Merge branch 'release_22.01' into release_22.05 2022-09-09 17:12:29 +01:00
Marius van den BeekandNicola Soranzo b05462a188 Add sbin to PATH 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2022-09-09 13:06:35 +02:00
mvdbeek 0256b34b34 Include /bin in sample systemd unit path 2022-09-09 12:52:05 +02:00
Nate Coraor 86e42b5483 Update Gravity to 0.13.4 and document setting env vars on dynamic 
handlers.
 2022-09-01 10:40:54 -04:00
Nate Coraor 270790edc7 Correct standalone pool names 2022-06-15 11:47:51 -04:00
mvdbeek 6f3bdd39d9 Merge branch 'release_22.01' into dev 2022-04-08 10:13:24 +02:00
mvdbeek e08d0c2c99 Fix gunicorn_extra_args, this is just extra_args nows 2022-04-06 20:37:17 +02:00
Nicola Soranzo e66bb0912d Drop last references to uWSGI 2022-03-22 14:31:08 +00:00
Marius van den BeekandNicola Soranzo 80b5bc7c65 Fix up grammar 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2022-02-23 21:31:36 +01:00
mvdbeek 2c15cb49eb Fix url scheme by passing in ----forwarded-allow-ips='*' 
Otherwise header information from the unix socket isn't trusted
(https://github.com/encode/uvicorn/blob/master/docs/deployment.md#running-behind-nginx).
You'll notice for instance that the redirect to the welcome page points
to the default http scheme, because X-Forward-Proto is not trusted.
 2022-02-23 19:52:07 +01:00
Marius van den BeekandNate Coraor e860d234d6 Just say that a random web worker will the the job handler 
Co-authored-by: Nate Coraor <nate@bx.psu.edu>
 2022-02-23 10:50:16 +01:00
Marius van den BeekandNate Coraor 527b0f3c66 Mention default gravity state dir if not running from galaxy's virtualenv 
Co-authored-by: Nate Coraor <nate@bx.psu.edu>
 2022-02-23 10:49:30 +01:00
mvdbeek 826e3ace30 Redundant paragraph on why legacy assignment methods are not good 2022-02-22 11:52:35 +01:00
mvdbeek ffa16ec076 Mention that update or one of the start/stop/restart commands need to be run to update the configuration 2022-02-22 11:48:36 +01:00
mvdbeek 0e6ba93ca5 Mention supervisor directory and gravity state dir 2022-02-22 11:46:53 +01:00
Marius van den BeekandNicola Soranzo e6b498ea80 Improve scaling documentation 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2022-02-21 20:52:16 +01:00
mvdbeek 79ed8de3fe Adjust pool example and dumb it down a little 
There's no "handler2" anymore that handles special and default jobs.
You can of course still set it up exactly as before, that's in the
test case.
 2022-02-19 19:36:57 +01:00
mvdbeek dfe372991d Drop TODO, it is implemented now 2022-02-19 19:36:57 +01:00
Marius van den BeekandNicola Soranzo 5d63a84b56 Mention systemd in starting and stopping section 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2022-02-18 14:22:40 +01:00
Marius van den Beek 29afb52d91 Move transparent starts into starting and stopping 2022-02-18 14:22:08 +01:00
mvdbeek df9338bec9 Describe startup and logging 2022-02-18 11:01:54 +01:00
mvdbeek 3cb8e8578a Add tentative instructions for setting number of processes in gravity section 2022-02-17 16:21:12 +01:00
mvdbeek 5e88eae47b Drop signals section 2022-02-16 20:01:29 +01:00
mvdbeek f0da15fbae Document job handler pool 2022-02-16 19:56:58 +01:00
mvdbeek 2a6491c9bc Fix typo 2022-02-16 19:56:58 +01:00
Marius van den BeekandNicola Soranzo 5b65486444 Use backticks around run.sh 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2022-02-16 19:53:29 +01:00
Marius van den BeekandNicola Soranzo 3af4671ffc Improve structure, add links 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2022-02-16 19:33:52 +01:00
mvdbeek 131af43957 Describe job handling 2022-02-16 19:31:27 +01:00
mvdbeek 7079008772 Recommend a proxy 
No, really, it's the better option.
 2022-02-16 19:00:27 +01:00
mvdbeek 5dc3a6f037 More progress, describe some basic gunicorn options 2022-02-16 18:41:43 +01:00
mvdbeek e7c37e60d5 Don't reference uwsgi only option in introductory statement 2022-02-15 17:26:58 +01:00
mvdbeek f4dd77b382 Downgrade pre-assignment to the fallback method it is 2022-02-15 17:25:35 +01:00
mvdbeek 2d1b341fcd WIP: Drop uWSGI from scaling documentation 2022-02-15 17:22:58 +01:00
mvdbeek 2f22a31a15 Update documentation for new defaults and recommendations 2021-04-13 10:13:42 +02:00
John Chilton f5648e2025 Fixup some linking between documents in sphinx. 2021-01-12 09:29:53 -05:00
Dannon Baker f935c6206b Clean up old 'blue' style path, update documentation and samples to refer to plain old 'static' now. 2020-02-03 22:41:29 -05:00
Dannon a6e173606d Merge pull request #7558 from erasche/fix-handler-docs 
Improve linking between job conf handler assignment and documentation
 2019-03-19 08:10:14 -04:00
Helena Rasche 38e888b87a Improve linking 2019-03-19 09:56:08 +01:00
Ott Oopkaup b247477a26 Update scaling.md 
Virtualenv and path envvars are neccesary, breaks toolshed installs
 2019-03-13 13:09:12 +02:00
Helena Rascheandooobik 50e1cea907 Update doc/source/admin/scaling.md 
Co-Authored-By: ooobik <ott.oopkaup@ut.ee>
 2019-03-13 13:06:19 +02:00
Helena Rascheandooobik a34f32c913 Update doc/source/admin/scaling.md 
Co-Authored-By: ooobik <ott.oopkaup@ut.ee>
 2019-03-13 13:06:09 +02:00
Helena Rascheandooobik d8010cc3dc Update doc/source/admin/scaling.md 
Co-Authored-By: ooobik <ott.oopkaup@ut.ee>
 2019-03-13 13:06:00 +02:00
alkhatraz 86f6f94e0f Updated systemd docs in admin/scaling 2019-03-12 18:24:45 +02:00
alkhatraz 651de51b95 Updated systemd docs in admin/scaling 2019-03-12 18:20:36 +02:00
Enis Afgan 000ba82895 Fix link doc syntax 2019-02-19 18:07:00 -05:00
Nicola Soranzo e725f8423a Disable auto toctree for Markdown docs. Doc syntax fixes 
recommonmark allows now to use the `.md` extension for cross referencing
other documents, which also works on GitHub.
 2019-02-06 17:12:06 +00:00
Nate Coraor 74fcf12fa0 Incorporate suggestions from @nsoranzo 2019-02-01 21:47:48 -05:00
Nicola Soranzoandnatefoo 9a133e91f8 Remove spurious characters 
Co-Authored-By: natefoo <nate@bx.psu.edu>
 2019-02-01 21:34:04 -05:00