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22 Commits
Author SHA1 Message Date
mvdbeek 3a2e936401 Install node from setup-node action in more tests 
Should help with nodeenv failing in CI tests, e.g.
```
Installing node into /home/runner/work/galaxy/galaxy/galaxy root/.tox/unit-coverage with nodeenv.
 * Install prebuilt node (18.12.1) .Incomplete read while readingfrom https://nodejs.org/download/release/v18.12.1/node-v18.12.1-linux-x64.tar.gz
.
Traceback (most recent call last):
  File "/home/runner/work/galaxy/galaxy/galaxy root/.tox/unit-coverage/bin/nodeenv", line 10, in <module>
    sys.exit(main())
  File "/home/runner/work/galaxy/galaxy/galaxy root/.tox/unit-coverage/lib/python3.7/site-packages/nodeenv.py", line 1104, in main
    create_environment(env_dir, args)
  File "/home/runner/work/galaxy/galaxy/galaxy root/.tox/unit-coverage/lib/python3.7/site-packages/nodeenv.py", line 980, in create_environment
    install_node(env_dir, src_dir, args)
  File "/home/runner/work/galaxy/galaxy/galaxy root/.tox/unit-coverage/lib/python3.7/site-packages/nodeenv.py", line 739, in install_node
    install_node_wrapped(env_dir, src_dir, args)
  File "/home/runner/work/galaxy/galaxy/galaxy root/.tox/unit-coverage/lib/python3.7/site-packages/nodeenv.py", line 762, in install_node_wrapped
    download_node_src(node_url, src_dir, args)
  File "/home/runner/work/galaxy/galaxy/galaxy root/.tox/unit-coverage/lib/python3.7/site-packages/nodeenv.py", line 602, in download_node_src
    with ctx as archive:
  File "/opt/hostedtoolcache/Python/3.7.16/x64/lib/python3.7/contextlib.py", line 112, in __enter__
    return next(self.gen)
  File "/home/runner/work/galaxy/galaxy/galaxy root/.tox/unit-coverage/lib/python3.7/site-packages/nodeenv.py", line 573, in tarfile_open
    tf = tarfile.open(*args, **kwargs)
  File "/opt/hostedtoolcache/Python/3.7.16/x64/lib/python3.7/tarfile.py", line 1573, in open
    saved_pos = fileobj.tell()
AttributeError: 'bytes' object has no attribute 'tell'
```
from https://github.com/galaxyproject/galaxy/actions/runs/4883207488/jobs/8714237674?pr=16036
 2023-05-04 17:35:06 +02:00
Nicola Soranzo c1e839c570 Replace `set-output commands with $GITHUB_OUTPUT` environment file 
See https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
 2022-10-17 02:26:39 +01:00
Nicola Soranzo 2988127158 Update GitHub action versions 2022-10-17 01:21:12 +01:00
Nicola Soranzo 02da77abcb Use `${{ github.workflow }}` in concurrency group name 2022-05-17 15:09:14 +02:00
Nicola Soranzo 1155b01784 Update GitHub action versions 2022-05-04 23:05:12 +01:00
Nicola Soranzo 6524e1f344 Fix path of venv when caching 2022-03-19 03:52:23 +00:00
mvdbeek 55aec359b0 Run extended metadata test on schedule 
Including outputs_to_working_directory, except for the integration
tests.
 2022-03-08 18:58:15 +01:00
mvdbeek 8065893ed2 Run all relevant tests with GALAXY_CONFIG_OVERRIDE_METADATA_STRATEGY: 'extended 2022-03-08 18:29:18 +01:00
mvdbeek 64d395862e Merge branch 'release_21.09' into dev 2022-01-24 09:28:08 +01:00
mvdbeek 6c7f4b0702 Skip api tests if lib/galaxy_test/selenium is touched 
(and other unrelated test).
 2022-01-23 10:42:34 +01:00
mvdbeek f42dd7f4f9 Fix performance test workflow 2021-10-29 16:11:34 +02:00
mvdbeek 198c59177d Add various include/exclude patterns for github workflows 2021-10-27 10:15:41 +02:00
mvdbeek b3a61496b2 Add various include/exclude patterns for github workflows 2021-10-27 10:11:27 +02:00
Nicola Soranzo 3cac4cc39e Merge branch 'release_21.09' into dev 2021-10-23 12:34:40 +01:00
Nicola Soranzo 258cf8eb3a Fix invalid framework GH workflow 
Fix:
```
The workflow is not valid. .github/workflows/framework.yaml (Line: 8, Col: 1): 'env' is already defined
```

Also:
- consistently sort top-level `env` and `concurrency` (as in
  https://docs.github.com/en/actions/learn-github-actions/workflow-syntax-for-github-actions )
- sort env variables alphabetically
 2021-10-23 00:07:40 +01:00
Nuwan Goonasekera baf5bc6331 Made venv cache dependent on exact python and os version. 
xref: https://github.com/python-poetry/poetry/pull/1908
xref: https://github.com/actions/setup-python/issues/182
 2021-10-04 19:24:21 +05:30
Nuwan Goonasekera ef2c5a357c Added more caching for github actions using tox and venv 2021-10-04 18:57:08 +05:30
mvdbeek 5c8898ffd9 Cancel already running job with same ref 
ref is "
The branch or tag ref that triggered the workflow run. For branches this in the format refs/heads/<branch_name>, and for tags it is refs/tags/<tag_name>.
"
 2021-06-30 16:25:29 +02:00
Sergey Golitsynskiy 94cc475681 Update github workflows to use postgres 13 2021-04-05 15:08:34 -04:00
Sergey Golitsynskiy be4429e4fb Replace: s/postgres/posgresql in db URLs 
Was deprecated in SQLAlchemy 1.3, removed in SQLAlchemy 1.4
https://docs.sqlalchemy.org/en/14/changelog/changelog_14.html#change-3687655465c25a39b968b4f5f6e9170b
https://github.com/sqlalchemy/sqlalchemy/issues/4643
 2021-04-05 15:02:26 -04:00
Nicola Soranzo 8ae5c6c14b Upload mulled unit test results as artifact in case of failure 2021-03-17 12:42:02 +00:00
John Chilton e3dedd86bc Performance metrics for tests. 2021-02-12 20:44:05 -05:00