205e32f884
Merge pull request #20040 from kysrpex/psa_reject_expired_tokens
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[23.1] Renew access tokens from PSA using valid refresh tokens
2025-05-07 14:32:22 +02:00
2a9ed6d672
Renew access tokens from PSA using valid refresh tokens
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Method `PSAAuthnz.refresh()` from psa_authnz.py holds its promise to refresh tokens only if they reached their half lifetime. However, that does not exclude expired tokens. Add an extra comparison to exclude expired refresh tokens.
2025-04-17 15:58:38 +02:00
01cbccdd0b
Merge pull request #19966 from kysrpex/oidc_tokens_logs
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[23.1] Do not print OIDC access tokens to the logs
2025-04-07 11:57:57 +02:00
ff68c73248
Do not print OIDC access tokens to the logs
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Do not print OIDC tokens to the logs when Custos auth refreshes tokens.
2025-04-07 10:21:16 +02:00
1955d2885b
Replace discouraged Mambaforge with Miniforge3
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As mentioned on https://github.com/conda-forge/miniforge :
With the release of Miniforge3-23.3.1-0, the packages and configuration of
Mambaforge and Miniforge3 are now identical. The only difference between the
two is the name of the installer and, subsequently, the default installation
directory.
Given its wide usage, there are no plans to deprecate Mambaforge. If at some
point we decide to deprecate Mambaforge, it will be appropriately announced
and communicated with sufficient time in advance.
As of September 2023, the new usage of Mambaforge is thus discouraged. Bug
reports specific to Mambaforge will be closed as won't fix.
2024-10-15 16:26:27 +01:00
d474492333
Merge pull request #18680 from jmchilton/restore_tool_shed_sessionless_apis
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[23.1] Fix toolshed sessionless access to a few APIs broken with..
2024-09-27 18:04:01 +02:00
80c55eb659
Merge branch 'release_23.0' into release_23.1
2024-09-20 08:26:20 +02:00
262d48a711
Merge branch 'release_22.05' into release_23.0
2024-09-20 08:25:57 +02:00
3e511c1b2b
Merge branch 'release_22.01' into release_22.05
2024-09-20 08:25:26 +02:00
101d4a6d41
Merge branch 'release_21.09' into release_22.01
2024-09-20 08:16:44 +02:00
0a039981bb
Merge branch 'release_21.05' into release_21.09
2024-09-20 08:15:59 +02:00
9a9c4a8eb8
Do not set uuid on dataset imports.
2024-09-20 08:15:27 +02:00
6370059700
Merge branch 'release_21.01' into release_21.05
2024-09-20 08:14:04 +02:00
b1da9d832e
Merge branch 'release_20.09' into release_21.01
2024-09-20 07:15:42 +02:00
13ab9430b3
Merge branch 'release_20.05' into release_20.09
2024-09-20 07:15:06 +02:00
99b3d29e69
Change mechanism for loading data into editor viz
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avoiding injecting it as innerHTML and executing contents.
2024-09-20 07:14:37 +02:00
7f4bb4f390
Restore session free acccess broken with...
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https://github.com/galaxyproject/galaxy/commit/12b34ff47c3e4bb86e2ba5d8813a050c44b506baf
2024-08-20 14:53:09 -04:00
60d063a179
Merge branch 'release_23.0' into release_23.1
2024-07-31 16:39:13 +02:00
2384c89f15
Merge pull request #18585 from hujambo-dunia/fix-null-type-check
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[23.0] Fix for Numeric form field to allow Null min/max values in validation methods
2024-07-31 16:11:18 +02:00
cb25669f3d
Fix for Numeric form field to allow Null min/max values in validation methods
2024-07-25 18:01:35 -04:00
7a5598b5a1
Merge branch 'release_23.0' into release_23.1
2024-07-25 17:03:28 +02:00
8880273fe4
Merge pull request #18593 from itisAliRH/api-key-eye
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[23.0] Fix API key reveals on mouse hover
2024-07-25 17:01:35 +02:00
f745aa7906
✨ : add eye icon to reveal API key and remove mouse over in APIKeyItem
2024-07-24 11:29:40 +02:00
85b0a2ba3f
Merge branch 'release_23.0' into release_23.1
2024-07-01 18:21:53 +02:00
502aeae7fa
Merge branch 'release_22.05' into release_23.0
2024-07-01 18:21:09 +02:00
569d653fa0
Merge pull request #18472 from bernt-matthias/22.05-bleach5.01
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[22.05] pin bleach to 5.0.1
2024-07-01 16:03:15 +02:00
95df247985
22.05 pin bleach to 5.0.1
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22.05 is currently failing planemo tests because bleach 5.0.0
has an error in its requirements that has been fixed here
https://github.com/mozilla/bleach/pull/655
2024-07-01 10:25:03 +02:00
9b60a8c4f3
Merge pull request #18332 from mvdbeek/permission_fix
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[23.1] Make toolshed repo permissions world-readable
2024-06-05 19:10:30 +02:00
8ee3b902b3
Make repo permissions world-readable
2024-06-05 17:59:13 +02:00
53b56a87ca
Merge pull request #18279 from mvdbeek/server_external_hgweb
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[23.1] More fixes for running the TS with external hgweb
2024-06-04 18:22:08 +02:00
992777edee
Fix typo
2024-06-04 17:00:43 +02:00
80e15b62e6
Remove html parameter from handle_exception
2024-06-03 19:42:37 +02:00
2e8c0df88b
Test and lint fixes
2024-06-03 17:52:27 +02:00
4978d64704
Don't delete tempdir
2024-06-03 17:27:20 +02:00
e2678914a7
Cast html=True to string
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I tried type overloads but they are incredibly verbose.
2024-06-03 17:27:20 +02:00
ea6751a149
Make repository creation slightly safer
2024-06-03 15:55:11 +02:00
1b985e74c1
Fix exception handler type hints
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Thank you!
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2024-05-31 17:44:23 +02:00
36b69e125d
Fix TS admin panel
2024-05-31 11:46:49 +02:00
7a29691dca
Return byte strings for error html
2024-05-31 11:37:28 +02:00
01e9f0243f
Log exceptions regardless of error log middleware outcome
2024-05-31 11:37:28 +02:00
06b8db47ba
Change hardcoded repo location in more place
2024-05-31 11:36:59 +02:00
aeaafc0cdc
Merge pull request #18271 from jdavcs/231_ts_revision_tags
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[23.1] Add revision tags for TS migration in 23.1
2024-05-31 10:02:29 +02:00
05eecfc219
Add revision tags for TS migration in 23.1
2024-05-30 11:36:57 -04:00
90c9d4756f
Merge pull request #18267 from jdavcs/231_ts_migration
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[23.1] Add missing TS migration
2024-05-30 15:46:20 +02:00
d0d16ebf49
Make column non-nullable
2024-05-30 09:34:38 -04:00
063d985650
Also set model to nullable=False
2024-05-30 11:50:43 +02:00
4099fcc15a
Set all old keys to deleted
2024-05-30 11:45:12 +02:00
a774c9234c
Add ts db migration: deleted column to api_keys tbl
2024-05-29 22:49:30 -04:00
b121db548c
Merge pull request #18256 from mvdbeek/server_external_hgweb
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[23.1] Minor fix to enable external hgweb process
2024-05-29 11:58:14 -04:00
410ccb9ab2
Fix up lock handling in hgweb_config_manager
2024-05-29 17:50:49 +02:00
Martin Cech