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fixed some configuration files

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This commit is contained in:
Rob Hooft
2011-04-13 21:02:06 +02:00
parent e2b633fd16
commit ff227df117
4 changed files with 4 additions and 4 deletions
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tools/annotation_profiler/annotation_profiler.xml
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<tool id="Annotation_Profiler_0" name="Profile Annotations" Version="1.0.0">
<tool id="Annotation_Profiler_0" name="Profile Annotations" version="1.0.0">
<description>for a set of genomic intervals</description>
<command interpreter="python">annotation_profiler_for_interval.py -i $input1 -c ${input1.metadata.chromCol} -s ${input1.metadata.startCol} -e ${input1.metadata.endCol} -o $out_file1 $keep_empty -p ${GALAXY_DATA_INDEX_DIR}/annotation_profiler/$dbkey $summary -b 3 -t $table_names</command>
<inputs>
tools/human_genome_variation/funDo.xml
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<tool id="hgv_funDo" name="FunDO" Version="1.0.0">
<tool id="hgv_funDo" name="FunDO" version="1.0.0">
<description>human genes associated with disease terms</description>
<command interpreter="perl">
tools/rgenetics/rgRegion.xml
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@@ -22,7 +22,7 @@
</inputs>
<outputs>
<data format="lped" name="out_file1" label="${title}.lped" metadata_source=infile />
<data format="lped" name="out_file1" label="${title}.lped" metadata_source="infile" />
</outputs>
<help>
tools/visualization/GMAJ.xml
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<tool id="gmaj_1" name="GMAJ" Version="2.0.1">
<tool id="gmaj_1" name="GMAJ" version="2.0.1">
<description>Multiple Alignment Viewer</description>
<command interpreter="python">GMAJ.py $out_file1 $maf_input $gmaj_file $filenames_file</command>
<inputs>