Remove old Lmap from datatypes_conf.xml.sample - now deprecated from genetics.py

Causing buildbot to barf.
This commit is contained in:
Ross Lazarus
2010-03-10 20:59:11 -05:00
parent 7e43ac02a4
commit fa4022a09a
3 changed files with 3 additions and 3 deletions
-1
View File
@@ -194,7 +194,6 @@
<!-- genome graphs ucsc file - first col is always marker then numeric values to plot -->
<datatype extension="gg" type="galaxy.datatypes.genetics:GenomeGraphs"/>
<!-- part of linkage format pedigree -->
<datatype extension="lmap" type="galaxy.datatypes.genetics:Lmap" display_in_upload="true"/>
<datatype extension="malist" type="galaxy.datatypes.genetics:MAlist" display_in_upload="true"/>
<!-- linkage format pedigree (separate .map file) -->
<datatype extension="lped" type="galaxy.datatypes.genetics:Lped" display_in_upload="true">
+2 -1
View File
@@ -1111,7 +1111,7 @@ class LibraryCommon( BaseController ):
# is composite - must return a zip of contents and the html file itself - ugh - should be reversible at upload!
# use act_on_multiple_datasets( self, trans, cntrller, library_id, ldda_ids='', **kwd ) since it does what we need
kwd['do_action'] = 'zip'
return self.act_on_multiple_datasets( trans, cntrller, library_id, ldda_ids=id, **kwd )
return self.act_on_multiple_datasets( trans, cntrller, library_id, ldda_ids=[id,], **kwd )
else:
mime = trans.app.datatypes_registry.get_mimetype_by_extension( ldda.extension.lower() )
trans.response.set_content_type( mime )
@@ -1258,6 +1258,7 @@ class LibraryCommon( BaseController ):
messagetype = 'error'
else:
ldda_ids = util.listify( ldda_ids )
log.debug('## act on multiple got %s' % ldda_ids)
if action == 'import_to_history':
history = trans.get_history()
if history is None:
+1 -1
View File
@@ -1,7 +1,7 @@
#!/bin/sh
# A good place to look for nose info: http://somethingaboutorange.com/mrl/projects/nose/
export PATH=/usr/local/bin:$PATH
rm -f run_functional_tests.log
if [ ! $1 ]; then