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Remove old Lmap from datatypes_conf.xml.sample - now deprecated from genetics.py
Causing buildbot to barf.
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@@ -194,7 +194,6 @@
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<!-- genome graphs ucsc file - first col is always marker then numeric values to plot -->
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<datatype extension="gg" type="galaxy.datatypes.genetics:GenomeGraphs"/>
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<!-- part of linkage format pedigree -->
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<datatype extension="lmap" type="galaxy.datatypes.genetics:Lmap" display_in_upload="true"/>
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<datatype extension="malist" type="galaxy.datatypes.genetics:MAlist" display_in_upload="true"/>
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<!-- linkage format pedigree (separate .map file) -->
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<datatype extension="lped" type="galaxy.datatypes.genetics:Lped" display_in_upload="true">
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@@ -1111,7 +1111,7 @@ class LibraryCommon( BaseController ):
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# is composite - must return a zip of contents and the html file itself - ugh - should be reversible at upload!
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# use act_on_multiple_datasets( self, trans, cntrller, library_id, ldda_ids='', **kwd ) since it does what we need
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kwd['do_action'] = 'zip'
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return self.act_on_multiple_datasets( trans, cntrller, library_id, ldda_ids=id, **kwd )
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return self.act_on_multiple_datasets( trans, cntrller, library_id, ldda_ids=[id,], **kwd )
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else:
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mime = trans.app.datatypes_registry.get_mimetype_by_extension( ldda.extension.lower() )
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trans.response.set_content_type( mime )
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@@ -1258,6 +1258,7 @@ class LibraryCommon( BaseController ):
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messagetype = 'error'
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else:
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ldda_ids = util.listify( ldda_ids )
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log.debug('## act on multiple got %s' % ldda_ids)
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if action == 'import_to_history':
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history = trans.get_history()
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if history is None:
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@@ -1,7 +1,7 @@
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#!/bin/sh
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# A good place to look for nose info: http://somethingaboutorange.com/mrl/projects/nose/
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export PATH=/usr/local/bin:$PATH
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rm -f run_functional_tests.log
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if [ ! $1 ]; then
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