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Upgrade SQLAlchemy to 2.0

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This conflicts with dependency requirements for sqlalchemy-graphene
(used only in toolshed, new WIP client)
This commit is contained in:
John Davis
2024-04-02 10:08:52 -04:00
parent d47f11d41d
commit fa344f7b4e
8 changed files with 8 additions and 8 deletions
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lib/galaxy/dependencies/pinned-requirements.txt
+1 -1
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@@ -182,7 +182,7 @@ sniffio==1.3.1 ; python_version >= "3.8" and python_version < "3.13"
social-auth-core==4.5.3 ; python_version >= "3.8" and python_version < "3.13"
sortedcontainers==2.4.0 ; python_version >= "3.8" and python_version < "3.13"
spython==0.3.13 ; python_version >= "3.8" and python_version < "3.13"
sqlalchemy==1.4.52 ; python_version >= "3.8" and python_version < "3.13"
sqlalchemy==2.0.25 ; python_version >= "3.8" and python_version < "3.13"
sqlitedict==2.1.0 ; python_version >= "3.8" and python_version < "3.13"
sqlparse==0.4.4 ; python_version >= "3.8" and python_version < "3.13"
starlette-context==0.3.6 ; python_version >= "3.8" and python_version < "3.13"
packages/app/setup.cfg
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@@ -68,7 +68,7 @@ install_requires =
refgenconf>=0.12.0
regex
requests
SQLAlchemy>=1.4.25,<2
SQLAlchemy>=2.0,<2.1
sqlitedict
starlette
svgwrite
packages/data/setup.cfg
+1 -1
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@@ -58,7 +58,7 @@ install_requires =
pysam>=0.21
rocrate
social-auth-core[openidconnect]==4.0.3
SQLAlchemy>=1.4.25,<2
SQLAlchemy>=2.0,<2.1
tifffile
typing-extensions
WebOb
packages/job_execution/setup.cfg
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@@ -38,7 +38,7 @@ install_requires =
galaxy-tool-util
galaxy-util
MarkupSafe
SQLAlchemy>=1.4.25,<2
SQLAlchemy>=2.0,<2.1
packages = find:
python_requires = >=3.8
packages/web_apps/setup.cfg
+1 -1
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@@ -58,7 +58,7 @@ install_requires =
PyYAML
requests
Routes
SQLAlchemy>=1.4.25,<2
SQLAlchemy>=2.0,<2.1
sqlalchemy-migrate
starlette
starlette-context
packages/web_framework/setup.cfg
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@@ -40,7 +40,7 @@ install_requires =
pydantic>=2,!=2.6.0,!=2.6.1
requests
Routes
SQLAlchemy>=1.4.25,<2
SQLAlchemy>=2.0,<2.1
WebOb
packages = find:
packages/web_stack/setup.cfg
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@@ -34,7 +34,7 @@ include_package_data = True
install_requires =
galaxy-data
galaxy-util
SQLAlchemy>=1.4.25,<2
SQLAlchemy>=2.0,<2.1
packages = find:
python_requires = >=3.8
pyproject.toml
+1 -1
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@@ -108,7 +108,7 @@ Routes = "*"
schema-salad = "!=8.3.20220721194857" # https://github.com/common-workflow-language/schema_salad/issues/575
social-auth-core = ">=4.5.0" # to drop dependency on abandoned python-jose
sortedcontainers = "*"
SQLAlchemy = ">=1.4.25,<2"
SQLAlchemy = "^2.0"
sqlitedict = "*"
sqlparse = "*"
starlette = "*"