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Merge pull request #8489 from mvdbeek/pyuwsgi

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Update requirements and use pyuwsgi
This commit is contained in:
Nate Coraor
2019-08-29 14:41:11 -04:00
committed by GitHub
parent dfa732aff2 5c8bb2e652
commit f9f0001a81
4 changed files with 52 additions and 49 deletions
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lib/galaxy/dependencies/pipfiles/default/Pipfile
+1 -1
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@@ -38,7 +38,7 @@ SQLAlchemy-Utils = "*"
Mercurial = {version = "<=3.7.3", markers = "python_version < '3'"}
nodeenv = "*"
pycryptodome = "*"
uWSGI = "*"
pyuwsgi = "*"
pysam = "==0.15.2"
bdbag = "==1.4.1" # 1.5.0 requires Python >=2.7.9
bleach = "*"
lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt
+13 -13
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@@ -8,18 +8,18 @@ babel==2.7.0
certifi==2019.6.16
chardet==3.0.4
commonmark==0.9.0
configparser==3.7.4 ; python_version < '3.2'
configparser==3.8.1 ; python_version < '3.2'
contextlib2==0.5.5 ; python_version < '3.5'
coverage==4.5.3
docutils==0.14
coverage==4.5.4
docutils==0.15.2
funcsigs==1.0.2 ; python_version < '3.3'
future==0.17.1
gunicorn==19.9.0
idna==2.8
imagesize==1.1.0
importlib-metadata==0.18
importlib-metadata==0.19
jinja2==2.10.1
lxml==4.3.4
lxml==4.4.1
markdown==2.6.11
markupsafe==1.1.1
mirakuru==1.1.0
@@ -27,7 +27,7 @@ mock==3.0.5
more-itertools==5.0.0
nose==1.3.7
nosehtml==0.4.5
packaging==19.0
packaging==19.1
pathlib2==2.3.2 ; python_version < '3'
pathtools==0.1.2
pluggy==0.12.0
@@ -36,16 +36,16 @@ psutil==5.6.3
py==1.8.0
pygithub3==0.5.1 ; python_version < '3'
pygments==2.4.2
pyparsing==2.4.0
pyparsing==2.4.2
pytest-cov==2.7.1
pytest-html==1.21.1
pytest-html==1.22.0
pytest-metadata==1.8.0
pytest-postgresql==1.4.1
pytest-pythonpath==0.7.3
pytest==4.6.4
pytz==2019.1
pyyaml==5.1.1
recommonmark==0.5.0
pytest==4.6.5
pytz==2019.2
pyyaml==5.1.2
recommonmark==0.6.0
requests==2.22.0
scandir==1.10.0 ; python_version < '3.5'
selenium==3.141.0
@@ -61,4 +61,4 @@ typing==3.7.4 ; python_version < '3.5'
urllib3==1.25.3 ; python_version == '2.7'
watchdog==0.9.0
wcwidth==0.1.7 ; sys_platform != 'win32'
zipp==0.5.1
zipp==0.5.2
lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
+36 -33
View File
@@ -1,7 +1,7 @@
-i https://wheels.galaxyproject.org/simple
--extra-index-url https://pypi.python.org/simple
adal==1.2.1
amqp==2.5.0
adal==1.2.2
amqp==2.5.1
appdirs==1.4.3
asn1crypto==0.24.0
attrs==19.1.0
@@ -24,12 +24,12 @@ bagit==1.6.4
bcrypt==3.1.7
bdbag==1.4.1
beaker==1.10.1
bioblend==0.12.0
bioblend==0.13.0
bleach==3.1.0
boltons==19.1.0
boto3==1.9.114
boto==2.49.0
botocore==1.12.180
botocore==1.12.212
bx-python==0.8.4
bz2file==0.98 ; python_version < '3.3'
cachecontrol==0.11.7
@@ -42,16 +42,17 @@ cliff==2.15.0
cloudauthz==0.6.0
cloudbridge==2.0.0
cmd2==0.8.9
configparser==3.8.1 ; python_version < '3.2'
contextlib2==0.5.5 ; python_version < '3.5'
cryptography==2.7
cwltool==1.0.20180721142728
debtcollector==1.21.0
decorator==4.4.0
deprecated==1.2.5
deprecation==2.0.6
deprecated==1.2.6
deprecation==2.0.7
dictobj==0.4
docopt==0.6.2
docutils==0.14
docutils==0.15.2
dogpile.cache==0.7.1
ecdsa==0.13.2
enum34==1.1.6 ; python_version < '3.4'
@@ -59,28 +60,29 @@ fabric3==1.14.post1
funcsigs==1.0.2 ; python_version < '3.3'
functools32==3.2.3.post2 ; python_version < '3.2'
future==0.17.1
futures==3.2.0 ; python_version == '2.6' or python_version == '2.7'
futures==3.3.0 ; python_version == '2.6' or python_version == '2.7'
galaxy-sequence-utils==1.1.3
google-api-python-client==1.7.8
google-auth-httplib2==0.0.3
google-auth==1.6.3
gxformat2==0.8.4
gxformat2==0.9.0
h5py==2.9.0
httplib2==0.13.0
httplib2==0.13.1
idna==2.8
importlib-metadata==0.19
ipaddress==1.0.22 ; python_version < '3.3'
isa-rwval==0.10.7
iso8601==0.1.12
isodate==0.6.0
jmespath==0.9.4
jsonpatch==1.23
jsonpatch==1.24
jsonpointer==2.0
jsonschema==3.0.1
keystoneauth1==3.14.0
kombu==4.6.3
jsonschema==3.0.2
keystoneauth1==3.17.0
kombu==4.6.4
lockfile==0.12.2
lxml==4.3.4
mako==1.0.12
lxml==4.4.1
mako==1.1.0
markupsafe==1.1.1
mercurial==3.7.3 ; python_version < '3'
mistune==0.8.4
@@ -97,31 +99,31 @@ nodeenv==1.3.3
nose==1.3.7
numpy==1.16.4
oauth2client==4.1.3
oauthlib==3.0.1
oauthlib==3.1.0
openstacksdk==0.17.0
os-client-config==1.32.0
os-service-types==1.7.0
osc-lib==1.13.0
oslo.config==6.10.0
oslo.config==6.11.0
oslo.context==2.22.1
oslo.i18n==3.23.1
oslo.log==3.44.0
oslo.serialization==2.29.1
oslo.utils==3.41.0
packaging==19.0
packaging==19.1
paramiko==2.6.0
parsley==1.3
paste==3.0.8
paste==3.1.0
pastedeploy==2.0.1
pastescript==3.1.0
pathlib2==2.3.2 ; python_version < '3'
pbr==5.3.1
pbr==5.4.2
prettytable==0.7.2
prov==1.5.1
psutil==5.6.3
pulsar-galaxy-lib==0.12.1
pyasn1-modules==0.2.5
pyasn1==0.4.5
pyasn1-modules==0.2.6
pyasn1==0.4.6
pycparser==2.19
pycryptodome==3.8.2
pyeventsystem==0.1.0
@@ -130,9 +132,9 @@ pyjwt==1.7.1
pykwalify==1.7.0
pynacl==1.3.0
pyopenssl==19.0.0
pyparsing==2.4.0
pyparsing==2.4.2
pyperclip==1.7.0
pyrsistent==0.15.2
pyrsistent==0.15.4
pysam==0.15.2
pysftp==0.2.9
python-cinderclient==4.0.0
@@ -145,8 +147,9 @@ python-neutronclient==6.9.0
python-novaclient==11.0.0
python-openid==2.2.5 ; python_version < '3.0'
python-swiftclient==3.6.0
pytz==2019.1
pyyaml==5.1.1
pytz==2019.2
pyuwsgi==2.0.18.post0
pyyaml==5.1.2
rdflib-jsonld==0.4.0
rdflib==4.2.2
repoze.lru==0.7
@@ -157,8 +160,8 @@ requestsexceptions==1.4.0
rfc3986==1.3.2
routes==2.4.1
rsa==4.0
ruamel.ordereddict==0.4.13 ; platform_python_implementation == 'CPython' and python_version <= '2.7'
ruamel.yaml==0.15.97
ruamel.ordereddict==0.4.14 ; platform_python_implementation == 'CPython' and python_version <= '2.7'
ruamel.yaml==0.15.100
s3transfer==0.2.1
scandir==1.10.0 ; python_version < '3.5'
schema-salad==2.7.20181126142424
@@ -167,8 +170,8 @@ simplejson==3.16.0
six==1.11.0
social-auth-core[openidconnect]==3.1.0+gx0
sqlalchemy-migrate==0.12.0
sqlalchemy-utils==0.34.0
sqlalchemy==1.3.5
sqlalchemy-utils==0.34.2
sqlalchemy==1.3.7
sqlparse==0.3.0
stevedore==1.30.1
subprocess32==3.5.4 ; python_version < '3.0'
@@ -177,11 +180,10 @@ tempita==0.5.2
tenacity==4.12.0
typing-extensions==3.7.4
typing==3.7.4 ; python_version < '3.5'
tzlocal==1.5.1
tzlocal==2.0.0
unicodecsv==0.14.1 ; python_version < '3.0'
uritemplate==3.0.0
urllib3==1.25.3 ; python_version == '2.7'
uwsgi==2.0.18
vine==1.3.0
warlock==1.3.3
wcwidth==0.1.7 ; sys_platform != 'win32'
@@ -189,3 +191,4 @@ webencodings==0.5.1
webob==1.8.5
whoosh==2.7.4
wrapt==1.11.2
zipp==0.5.2
lib/galaxy/dependencies/pipfiles/flake8/pinned-requirements.txt
+2 -2
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@@ -1,9 +1,9 @@
-i https://pypi.python.org/simple
configparser==3.7.4 ; python_version < '3.2'
configparser==3.8.1 ; python_version < '3.2'
entrypoints==0.3
enum34==1.1.6 ; python_version < '3.4'
flake8-import-order==0.18.1
flake8==3.7.7
flake8==3.7.8
functools32==3.2.3.post2 ; python_version < '3.2'
mccabe==0.6.1
pycodestyle==2.5.0