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Deprecate size attribute of <param/> and remove it from tools

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Also:
- dos2unix test/functional/tools/for_workflows/head.xml
- Single-quote text and data params in `<command/>`
- Remove deprecated `interpreter` attribute of `<command />`
This commit is contained in:
Nicola Soranzo
2018-09-10 11:34:37 +01:00
parent 952fdac419
commit f865e8359f
34 changed files with 244 additions and 268 deletions
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tools/plotting/boxplot.xml
+3 -3
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@@ -6,10 +6,10 @@
</requirements>
<inputs>
<param name="input_file" type="data" format="tabular" label="Quality Statistics File"/>
<param name="title" type="text" value="Box plot in Galaxy" label="Title for plot" size="50"/>
<param name="title" type="text" value="Box plot in Galaxy" label="Title for plot" />
<param name="graph_size" type="text" value="2048,768" label="Dimensions of Graph"/>
<param name="xlabel" type="text" value="X Axis Label" label="X axis label" size="50"/>
<param name="ylabel" type="text" value="Score Value" label="Y axis label" size="50"/>
<param name="xlabel" type="text" value="X Axis Label" label="X axis label" />
<param name="ylabel" type="text" value="Score Value" label="Y axis label" />
<param name="xcol" type="data_column" data_ref="input_file" label="Column for X axis position" default_value="1" help="A unique number; c1 if plotting output of FASTQ summary"/>
<param name="q1col" type="data_column" data_ref="input_file" label="Column for Q1" default_value="7" help="c7 if plotting output of FASTQ summary"/>
<param name="medcol" type="data_column" data_ref="input_file" label="Column for Median" default_value="8" help="c8 if plotting output of FASTQ summary"/>