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Clarify inputs for forward, reverse reads in Tophat2 wrapper.

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Jeremy Goecks
2012-06-04 09:29:51 -04:00
parent 1774b76b32
commit f7cfc540bd
1 changed files with 2 additions and 2 deletions
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tools/ngs_rna/tophat2_wrapper.xml
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@@ -124,8 +124,8 @@
<param format="fastqsanger" name="input1" type="data" label="RNA-Seq FASTQ file" help="Nucleotide-space: Must have Sanger-scaled quality values with ASCII offset 33"/>
</when>
<when value="paired">
<param format="fastqsanger" name="input1" type="data" label="RNA-Seq FASTQ file" help="Nucleotide-space: Must have Sanger-scaled quality values with ASCII offset 33" />
<param format="fastqsanger" name="input2" type="data" label="RNA-Seq FASTQ file" help="Nucleotide-space: Must have Sanger-scaled quality values with ASCII offset 33" />
<param format="fastqsanger" name="input1" type="data" label="RNA-Seq FASTQ file, forward reads" help="Nucleotide-space: Must have Sanger-scaled quality values with ASCII offset 33" />
<param format="fastqsanger" name="input2" type="data" label="RNA-Seq FASTQ file, reverse reads" help="Nucleotide-space: Must have Sanger-scaled quality values with ASCII offset 33" />
<param name="mate_inner_distance" type="integer" value="300" label="Mean Inner Distance between Mate Pairs" />
<param name="mate_std_dev" type="integer" value="20" label="Std. Dev for Distance between Mate Pairs" help="The standard deviation for the distribution on inner distances between mate pairs."/>
<!-- Discordant pairs. -->