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Update gsummary.xml

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rpy seems not available within the Conda packages. 
So I add rpy2 in the requirements.

It works for me! I ❤️ Conda
This commit is contained in:
Gildas Le Corguillé
2016-07-07 12:02:51 +02:00
committed by GitHub
parent a630c92df4
commit f7cbefc1f3
1 changed files with 10 additions and 6 deletions
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tools/stats/gsummary.xml
+10 -6
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@@ -1,9 +1,17 @@
<tool id="Summary_Statistics1" name="Summary Statistics" version="1.1.0">
<tool id="Summary_Statistics1" name="Summary Statistics" version="1.1.1">
<description>for any numerical column</description>
<edam_topics>
<edam_topic>topic_2269</edam_topic>
</edam_topics>
<command interpreter="python">gsummary.py $input $out_file1 "$cond"</command>
<requirements>
<requirement type="package" version="2.15.1">R</requirement>
<requirement type="package">rpy</requirement>
<requirement type="package" version="2.7.8">rpy2</requirement>
</requirements>
<stdio>
<exit_code range="1" level="fatal" />
</stdio>
<command>ptyhon $__tool_directory__/gsummary.py $input $out_file1 "$cond"</command>
<inputs>
<param format="tabular" name="input" type="data" label="Summary statistics on" help="Dataset missing? See TIP below"/>
<param name="cond" size="30" type="text" value="c5" label="Column or expression" help="See syntax below">
@@ -13,10 +21,6 @@
<outputs>
<data format="tabular" name="out_file1" />
</outputs>
<requirements>
<requirement type="package" version="2.15.1">R</requirement>
<requirement type="package">rpy</requirement>
</requirements>
<tests>
<test>
<param name="input" value="1.bed"/>