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Refactor workflow import for more informative errors/traces.

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This commit is contained in:
John Chilton
2018-10-12 13:41:13 -04:00
parent c779e125b7
commit f7415cb620
1 changed files with 6 additions and 2 deletions
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lib/galaxy/managers/workflows.py
+6 -2
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@@ -978,7 +978,8 @@ class WorkflowContentsManager(UsesAnnotations):
# Create the model class for the step
steps.append(step)
steps_by_external_id[step_dict['id']] = step
external_id = step_dict["id"]
steps_by_external_id[external_id] = step
if 'workflow_outputs' in step_dict:
workflow_outputs = step_dict['workflow_outputs']
found_output_names = set([])
@@ -1052,7 +1053,10 @@ class WorkflowContentsManager(UsesAnnotations):
conn.input_step = step
conn.input_name = input_name
conn.output_name = conn_dict['output_name']
conn.output_step = steps_by_external_id[conn_dict['id']]
external_id = conn_dict['id']
if external_id not in steps_by_external_id:
raise KeyError("Failed to find external id %s in %s" % (external_id, steps_by_external_id.keys()))
conn.output_step = steps_by_external_id[external_id]
input_subworkflow_step_index = conn_dict.get('input_subworkflow_step_id', None)
if input_subworkflow_step_index is not None: