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Patch for picard_AddOrReplaceReadGroups.xml to add --tmpdir "${__new_file_path__}" to the command line generated. That will over-ride the default value "/tmp" for opts.tmpdir in picard_wrapper.py and solve the problem with /tmp filling reported by Matt Shirley.
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@@ -16,6 +16,7 @@
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--output-format=$outputFormat
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--output=$outFile
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-j "${GALAXY_DATA_INDEX_DIR}/shared/jars/picard/AddOrReplaceReadGroups.jar"
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--tmpdir "${__new_file_path__}"
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</command>
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<inputs>
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<param format="bam,sam" name="inputFile" type="data" label="SAM/BAM dataset to add or replace read groups in"
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