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Renamed test files and fixed output datatype problem with solid-to-fastq tool

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This commit is contained in:
Kelly Vincent
2009-08-04 16:32:57 -04:00
parent d5c53209eb
commit f5d67cda72
1 changed files with 7 additions and 6 deletions
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tools/next_gen_conversion/solid_to_fastq.xml
+7 -6
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@@ -38,17 +38,18 @@
</inputs>
<outputs>
<!-- Variable number of outputs. Either one (for single-end) or two (for paired-end) -->
<data name="output1" format="tabular"/>
<data name="output2" format="tabular">
<data name="output1" format="fastqsanger"/>
<data name="output2" format="fastqsanger">
<filter>paired['pairedSingle'] == 'paired'</filter>
</data>
</outputs>
<tests>
<!-- <test>
<!--
<test>
<param name="pairedSingle" value="single" />
<param name="input1" value="s2fq_phiX.csfasta" ftype="csfasta" />
<param name="input2" value="s2fq_phiX.qualsolid" ftype="qualsolid" />
<output name="output1" file="s2fq_out1.tabular" />
<output name="output1" file="s2fq_out1.fastqsanger" />
</test>
-->
<!-- testing framework does not deal with multiple outputs yet
@@ -58,8 +59,8 @@
<param name="input2" value="s2fq_paired_F3_QV.qualsolid" ftype="qualsolid" />
<param name="input3" value="s2fq_paired_R3.csfasta" ftype="csfasta" />
<param name="input4" value="s2fq_paired_R3_QV.qualsolid" ftype="qualsolid" />
<output name="output1" file="s2fq_out2.tabular" />
<output name="output2" file="s2fq_out3.tabular" />
<output name="output1" file="s2fq_out2.fastqsanger" />
<output name="output2" file="s2fq_out3.fastqsanger" />
</test>
-->
</tests>