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Removed non-Bourne syntax from the SGE job script template.

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Nate Coraor
2008-06-03 16:47:03 +00:00
parent 2e8d7e4115
commit f28fe5c4f0
1 changed files with 3 additions and 2 deletions
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lib/galaxy/jobs/runners/sge.py
+3 -2
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@@ -33,10 +33,11 @@ sge_template = """#!/bin/sh
GALAXY_LIB="%s"
if [ "$GALAXY_LIB" != "None" ]; then
if [ -n "$PYTHONPATH" ]; then
export PYTHONPATH="$GALAXY_LIB:$PYTHONPATH"
PYTHONPATH="$GALAXY_LIB:$PYTHONPATH"
else
export PYTHONPATH="$GALAXY_LIB"
PYTHONPATH="$GALAXY_LIB"
fi
export PYTHONPATH
fi
cd %s
%s