Use APITestCase class to run framework tool tests

This commit is contained in:
mvdbeek
2022-11-18 18:35:15 +01:00
parent efd5b4186a
commit f24eaa581a
+36 -57
View File
@@ -1,30 +1,24 @@
import os
import sys
from typing import (
List,
NamedTuple,
)
galaxy_root = os.path.abspath(os.path.join(os.path.dirname(__file__), os.path.pardir + "/" + os.path.pardir))
sys.path[1:1] = [os.path.join(galaxy_root, "lib"), os.path.join(galaxy_root, "test")]
import pytest
from galaxy_test.driver import driver_util
from galaxy_test.api._framework import ApiTestCase
SKIPTEST = os.path.join(os.path.dirname(__file__), "known_broken_tools.txt")
TEST_PREFIX = "TestForTool_"
class DefaultGalaxyTestDriver(driver_util.GalaxyTestDriver):
"""Default Galaxy-style test driver.
Just populate non-shed tool tests and run tests. Works
for tool tests, regular twill tests, and API testing.
"""
conda_auto_init = True
conda_auto_install = True
def build_tests(self):
"""Build framework tool test methods."""
return self.build_tool_tests(return_test_classes=True)
class ToolTest(NamedTuple):
tool_id: str
tool_version: str
test_index: int
def get_skiplist():
@@ -33,53 +27,38 @@ def get_skiplist():
return skiplist
def galaxy_driver():
driver = DefaultGalaxyTestDriver()
driver.setup()
return driver
@pytest.fixture(scope="module")
def driver(request):
request.addfinalizer(DRIVER.tear_down)
return DRIVER
def get_cases():
# We setup a global driver, so that the driver fixture can tear down the driver
# Ideally `galaxy_driver` or `cases` would be fixtures and clean up after the yield,
# but that's not compatible with the use use of pytest.mark.parametrize
global DRIVER
DRIVER = galaxy_driver()
tests = DRIVER.build_tests()
cases = []
for test_name, test_class in tests.items():
if test_name.startswith(TEST_PREFIX):
test_class.runTest = lambda: None
test_instance = test_class()
cases.append(test_instance)
return cases
def get_cases() -> List[ToolTest]:
atc = ApiTestCase()
atc.setUpClass()
atc.setUp()
test_summary = atc.galaxy_interactor.get_tests_summary()
test_cases = []
for tool_id, summary_dict in test_summary.items():
for tool_version, tool_dict in summary_dict.items():
for index in range(tool_dict["count"]):
test_cases.append(ToolTest(tool_id, tool_version, index))
atc.tearDown()
atc.tearDownClass()
return test_cases
def cases():
skiplist = get_skiplist()
for test_instance in get_cases():
for index in range(test_instance.test_count):
test = (test_instance.tool_id + "_test_%d" % (index + 1), test_instance, index)
marks = []
marks.append(pytest.mark.skipif(test_instance.tool_id in skiplist, reason="tool in skiplist"))
if "data_manager_" in test_instance.tool_id:
marks.append(pytest.mark.data_manager(test))
else:
marks.append(pytest.mark.tool(test))
yield pytest.param(test, marks=marks)
for tool_test in get_cases():
marks = []
marks.append(pytest.mark.skipif(tool_test.tool_id in skiplist, reason="tool in skiplist"))
if "data_manager_" in tool_test.tool_id:
marks.append(pytest.mark.data_manager(tool_test))
else:
marks.append(pytest.mark.tool(tool_test))
yield pytest.param(tool_test, marks=marks)
def idfn(val):
return val[0]
def idfn(val: ToolTest):
return f"{val.tool_id}/{val.tool_version}-{val.test_index}"
@pytest.mark.parametrize("testcases", cases(), ids=idfn)
def test_tool(testcases, driver):
test = testcases[1]
test.do_it(test_index=testcases[2])
class TestFrameworkTools(ApiTestCase):
@pytest.mark.parametrize("testcase", cases(), ids=idfn)
def test_tool(self, testcase: ToolTest):
self._test_driver.run_tool_test(testcase.tool_id, testcase.test_index, tool_version=testcase.tool_version)