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Fixed an error in the help section of the Sam Pileup tool config

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Kelly Vincent
2009-09-25 16:49:30 -04:00
parent c5ee982295
commit ef2ef943ea
1 changed files with 4 additions and 4 deletions
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tools/samtools/sam_pileup.xml
+4 -4
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@@ -85,9 +85,9 @@ Uses SAMTools_' pileup command to produce a pileup dataset from a provided BAM d
**Types of pileup datasets**
The description of pileup format below is largely based on information that can be found on SAMTools_ documentation page. The 6- and 10-column variants are described below.
The description of pileup format below is largely based on information that can be found on SAMTools Pileup_ documentation page. The 6- and 10-column variants are described below.
.. _SAMTools: http://samtools.sourceforge.net/pileup.shtml
.. _Pileup: http://samtools.sourceforge.net/pileup.shtml
**Six column pileup**::
@@ -111,7 +111,7 @@ where::
**Ten column pileup**
The `ten-column`__ pileup incorporates additional consensus information generated with *-c* option of *samtools pileup* command::
The `ten-column` (consensus_) pileup incorporates additional consensus information generated with *-c* option of *samtools pileup* command::
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@@ -137,7 +137,7 @@ where::
10 Quality values (phred33 scale, see Galaxy wiki for more)
.. __: http://samtools.sourceforge.net/cns0.shtml
.. _consensus: http://samtools.sourceforge.net/cns0.shtml
</help>