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Integration test for 'outputs_to_working_directory' with Pulsar.

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This commit is contained in:
John Chilton
2019-07-16 10:23:33 -04:00
parent f7b37516d7
commit ef29b72e00
2 changed files with 27 additions and 3 deletions
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test/integration/test_pulsar_embedded_copy_working.py
+24
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@@ -0,0 +1,24 @@
"""Integration tests for the Pulsar embedded runner with outputs to working directory."""
import os
from base import integration_util
SCRIPT_DIRECTORY = os.path.abspath(os.path.dirname(__file__))
EMBEDDED_PULSAR_JOB_CONFIG_FILE = os.path.join(SCRIPT_DIRECTORY, "embedded_pulsar_job_conf.yml")
class EmbeddedCopyWorkingPulsarIntegrationInstance(integration_util.IntegrationInstance):
"""Describe a Galaxy test instance with embedded pulsar configured."""
framework_tool_and_types = True
@classmethod
def handle_galaxy_config_kwds(cls, config):
config["job_config_file"] = EMBEDDED_PULSAR_JOB_CONFIG_FILE
config["outputs_to_working_directory"] = True
instance = integration_util.integration_module_instance(EmbeddedCopyWorkingPulsarIntegrationInstance)
test_tools = integration_util.integration_tool_runner(["output_format"])
test/integration/test_pulsar_embedded_metadata.py
+3 -3
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@@ -1,4 +1,4 @@
"""Integration tests for the Pulsar embedded runner."""
"""Integration tests for the Pulsar embedded runner with remote metadata."""
import os
@@ -8,7 +8,7 @@ SCRIPT_DIRECTORY = os.path.abspath(os.path.dirname(__file__))
EMBEDDED_PULSAR_JOB_CONFIG_FILE = os.path.join(SCRIPT_DIRECTORY, "embedded_pulsar_metadata_job_conf.yml")
class EmbeddedPulsarIntegrationInstance(integration_util.IntegrationInstance):
class EmbeddedMetadataPulsarIntegrationInstance(integration_util.IntegrationInstance):
"""Describe a Galaxy test instance with embedded pulsar configured."""
framework_tool_and_types = True
@@ -18,6 +18,6 @@ class EmbeddedPulsarIntegrationInstance(integration_util.IntegrationInstance):
config["job_config_file"] = EMBEDDED_PULSAR_JOB_CONFIG_FILE
instance = integration_util.integration_module_instance(EmbeddedPulsarIntegrationInstance)
instance = integration_util.integration_module_instance(EmbeddedMetadataPulsarIntegrationInstance)
test_tools = integration_util.integration_tool_runner(["simple_constructs"])