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Merge pull request #10984 from davebx/stc_sections

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Put new toolshed tools in existing tool panel sections if the ID matches
This commit is contained in:
Marius van den Beek
2021-01-13 15:17:09 +01:00
committed by GitHub
parent c148445e6c 3c8da66593
commit eec72b2e24
1 changed files with 16 additions and 1 deletions
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lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py
+16 -1
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@@ -56,7 +56,22 @@ class ToolPanelManager:
config_elems.append(elem)
# Add the new elements to the in-memory list of config_elems.
for elem_entry in elem_list:
config_elems.append(elem_entry)
if elem_entry.tag == 'section':
# Loop through section entries in the in-memory tool panel.
for existing_elem in config_elems:
# Compare the section ID for each one to the section ID for the tool being installed.
if existing_elem.tag == 'section' and existing_elem.attrib.get('id', None) == elem_entry.attrib.get('id', None):
# We've found a section, add the incoming tools to it.
for child in elem_entry:
existing_elem.append(child)
# Break out of the config_elems loop back to the elem_list loop.
break
# If we reach this point, no section was found. Create one with contents.
else:
config_elems.append(elem_entry)
# This is not a section, but a tool or label. No need to search for matching sections, just add it.
else:
config_elems.append(elem_entry)
# Persist the altered shed_tool_config file.
self.config_elems_to_xml_file(config_elems, shed_tool_conf, tool_path, tool_cache_data_dir)
self.app.wait_for_toolbox_reload(old_toolbox)