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Fix references to config.ucsc_display_sites that I missed.

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Nate Coraor
2014-09-10 14:37:33 -04:00
parent 4cbc33af09
commit ebf67f5fad
6 changed files with 6 additions and 6 deletions
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display_applications/ucsc/bam.xml
+1 -1
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@@ -6,7 +6,7 @@
<dynamic_param name="ucsc_link" value="1"/>
<dynamic_param name="builds" value="2" split="True" separator="," />
<!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey -->
<filter>${site_id in $APP.config.ucsc_display_sites}</filter>
<filter>${site_id in $APP.datatypes_registry.get_display_sites('ucsc')}</filter>
<filter>${dataset.dbkey in $builds}</filter>
<!-- We define url and params as normal, but values defined in dynamic_param are available by specified name -->
<url>${ucsc_link}db=${qp($bam_file.dbkey)}&amp;hgt.customText=${qp($track.url)}</url>
display_applications/ucsc/bigbed.xml
+1 -1
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@@ -6,7 +6,7 @@
<dynamic_param name="ucsc_link" value="1"/>
<dynamic_param name="builds" value="2" split="True" separator="," />
<!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey -->
<filter>${site_id in $APP.config.ucsc_display_sites}</filter>
<filter>${site_id in $APP.datatypes_registry.get_display_sites('ucsc')}</filter>
<filter>${dataset.dbkey in $builds}</filter>
<!-- We define url and params as normal, but values defined in dynamic_param are available by specified name -->
<url>${ucsc_link}db=${qp($bigbed_file.dbkey)}&amp;hgt.customText=${qp($track.url)}</url>
display_applications/ucsc/bigwig.xml
+1 -1
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@@ -6,7 +6,7 @@
<dynamic_param name="ucsc_link" value="1"/>
<dynamic_param name="builds" value="2" split="True" separator="," />
<!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey -->
<filter>${site_id in $APP.config.ucsc_display_sites}</filter>
<filter>${site_id in $APP.datatypes_registry.get_display_sites('ucsc')}</filter>
<filter>${dataset.dbkey in $builds}</filter>
<!-- We define url and params as normal, but values defined in dynamic_param are available by specified name -->
<url>${ucsc_link}db=${qp($bigwig_file.dbkey)}&amp;hgt.customText=${qp($track.url)}</url>
display_applications/ucsc/interval_as_bed.xml
+1 -1
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@@ -6,7 +6,7 @@
<dynamic_param name="ucsc_link" value="1"/>
<dynamic_param name="builds" value="2" split="True" separator="," />
<!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey -->
<filter>${site_id in $APP.config.ucsc_display_sites}</filter>
<filter>${site_id in $APP.datatypes_registry.get_display_sites('ucsc')}</filter>
<filter>${dataset.dbkey in $builds}</filter>
<!-- We define url and params as normal, but values defined in dynamic_param are available by specified name -->
<url>${ucsc_link}db=${qp($bed_file.dbkey)}&amp;position=${position.qp}&amp;hgt.customText=${bed_file.qp}</url>
display_applications/ucsc/maf_customtrack.xml
+1 -1
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@@ -6,7 +6,7 @@
<dynamic_param name="ucsc_link" value="1"/>
<dynamic_param name="builds" value="2" split="True" separator="," />
<!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey -->
<filter>${site_id in $APP.config.ucsc_display_sites}</filter>
<filter>${site_id in $APP.datatypes_registry.get_display_sites('ucsc')}</filter>
<filter>${dataset.dbkey in $builds}</filter>
<!-- We define url and params as normal, but values defined in dynamic_param are available by specified name -->
<url>${ucsc_link}db=${qp($maf_customtrack_file.dbkey)}&amp;position=${maf_customtrack_file.metadata.vp_chromosome}:${maf_customtrack_file.metadata.vp_start}-${maf_customtrack_file.metadata.vp_end}&amp;hgt.customText=${maf_customtrack_file.qp}</url>
display_applications/ucsc/vcf.xml
+1 -1
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@@ -6,7 +6,7 @@
<dynamic_param name="ucsc_link" value="1"/>
<dynamic_param name="builds" value="2" split="True" separator="," />
<!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey -->
<filter>${site_id in $APP.config.ucsc_display_sites}</filter>
<filter>${site_id in $APP.datatypes_registry.get_display_sites('ucsc')}</filter>
<filter>${dataset.dbkey in $builds}</filter>
<!-- We define url and params as normal, but values defined in dynamic_param are available by specified name -->
<url>${ucsc_link}db=${qp($bgzip_file.dbkey)}&amp;hgt.customText=${qp($track.url)}</url>