Update....

This commit is contained in:
John Chilton
2018-10-04 14:11:08 -04:00
parent b5f7955c5a
commit eacec03d10
2 changed files with 21 additions and 29 deletions
+1 -20
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@@ -11,9 +11,7 @@ Enhancements
.. feature
* Allow selecting subset of collection by group tag
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 5457`_
* Copy data from a cloud-based storage to a Galaxy history
(thanks to `@VJalili <https://github.com/VJalili>`__).
`Pull Request 5835`_
@@ -225,12 +223,6 @@ Enhancements
* small improvement to the too xsd docs regarding discovered_datasets
(thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).
`Pull Request 6490`_
* Implement ``group:`` tags (toward multi-factor analysis with group tagging)
`Pull Request 6491`_
* Allow setting tags on targets & contents in data fetch API.
`Pull Request 6499`_
* Integrate tagging into the rule builder.
`Pull Request 6500`_
* Cache chrom_info generation when mapping over collections.
`Pull Request 6515`_
* More optimized HID generation - in one commit instead of two.
@@ -254,8 +246,6 @@ Enhancements
`Pull Request 6539`_
* Test case for nested collection input to flatten in a workflow.
`Pull Request 6541`_
* Allow Consuming Tags in the Apply Rules Tool
`Pull Request 6545`_
* Integration test for the interaction of nested object stores and jobs.
`Pull Request 6546`_
* Configure object store for datasets in job handler instead of web thread.
@@ -264,10 +254,6 @@ Enhancements
`Pull Request 6552`_
* Unified dataset permission API.
`Pull Request 6568`_
* Add tagging rule to history level rule builder, copy HDAs when building
collection
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 6572`_
* Add API endpoint to fetch a history's workflow invocations.
`Pull Request 6580`_
* Improve robustness of tour Selenium test.
@@ -314,9 +300,6 @@ Enhancements
* Add Seurat datatype: rdata.seurat
(thanks to `@mblue9 <https://github.com/mblue9>`__).
`Pull Request 6648`_
* Allow group tag selection also for multiple="true" inputs
(thanks to `@mvdbeek <https://github.com/mvdbeek>`__).
`Pull Request 6661`_
* Various link and documentation fixes
(thanks to `@nsoranzo <https://github.com/nsoranzo>`__).
`Pull Request 6662`_
@@ -330,8 +313,6 @@ Enhancements
`Pull Request 6681`_
* Add self help to error reporting interface
`Pull Request 6711`_
* Undo auto-propagation of group tags.
`Pull Request 6750`_
* Client build startup changes
`Pull Request 6753`_
* Add graph dot datatype and enable it in visualisations
+20 -9
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@@ -8,14 +8,6 @@ September 2018 Galaxy Release (v 18.09)
Highlights
===========================================================
**OpenID Connect Support**
Galaxy now supports using OpenID Connect for user login, relying on trusted
identity providers to manage authentication. This is intended to replace the
old (and mostly deprecated, on the web) OpenID 2.0 logins. Read more at
https://galaxyproject.org/admin/authentication/
`https://github.com/galaxyproject/galaxy/pull/4474`
**Extensive Workflow Enhancements**
Workflows got a lot of love this time around, with new runtime parameters for
subworkflows, exposed workflow versions, and zoom capability in the editor, to
@@ -24,6 +16,19 @@ Highlights
(link up PRs)
**Group Tags**
Galaxy now contains powerful new features for multiple factor analysis of collections
of datasets. The concept of group tags has been added to Galaxy. These are a special
class of tags that describe key-value pairs that can be attached to the contents of a
collection during upload or using collection operation tools. These tags can describe
multiple sets of variables for the contents of a collection. Once set, these tags can
be consumed intelligently by tools that need to divide collections into multiple
overlapping factors or sets of datasets. A special thanks to `@mvdbeek <https://github.com/mvdbeek>`__ for devising and implementing this approach.
`Pull Request 5457`_, `Pull Request 6491`_, `Pull Request 6661`_,
`Pull Request 6750`_, `Pull Request 6499`_, `Pull Request 6500`_,
`Pull Request 6572`_, `Pull Request 6545`_
**Python 3 Beta Support**
After almost 3 years of work and more than 100 pull requests, we are proud
to announce the Beta-stage support for running Galaxy under Python 3.
@@ -51,7 +56,13 @@ See the `community hub <https://galaxyproject.org/develop/source-code/>`__ for a
Security
========
(TODO: Add notes)
Unauthorized File System Operations via New Upload API
------------------------------------------------------
Tracked as GX-2018-0006. Servers running Galaxy 18.05 should be updated as soon as possible.
See `the public announcement for full details
<http://announce.list.galaxyproject.org/GX-2018-0006-Unauthorized-File-System-Operations-via-New-Upload-API-td4639432.html>`__.
Breaking Changes
================