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Fix a bug where the user's environment wasn't passed through the local runner.

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This commit is contained in:
Nate Coraor
2008-04-24 18:18:28 +00:00
parent b2e8f6a255
commit ea8a46baaa
1 changed files with 3 additions and 4 deletions
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lib/galaxy/jobs/runners/local.py
+3 -4
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@@ -53,13 +53,12 @@ class LocalJobRunner( object ):
return
# If we were able to get a command line, run the job
if command_line:
env = os.environ
if job_wrapper.galaxy_lib_dir is not None:
if 'PYTHONPATH' in os.environ:
env = { 'PYTHONPATH' : "%s:%s" % ( os.environ['PYTHONPATH'], job_wrapper.galaxy_lib_dir ) }
env['PYTHONPATH'] = "%s:%s" % ( os.environ['PYTHONPATH'], job_wrapper.galaxy_lib_dir )
else:
env = { 'PYTHONPATH' : job_wrapper.galaxy_lib_dir }
else:
env = {}
env['PYTHONPATH'] = job_wrapper.galaxy_lib_dir
try:
log.debug( 'executing: %s' % command_line )
proc = subprocess.Popen( args = command_line,