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Fix for populating the tool panel and generating the integrated_tool_panel.xml file.

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This commit is contained in:
Greg Von Kuster
2012-03-07 13:35:34 -05:00
parent 680a0ebbd5
commit ea4db057f5
1 changed files with 7 additions and 7 deletions
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lib/galaxy/tools/__init__.py
+7 -7
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@@ -72,6 +72,13 @@ class ToolBox( object ):
self.init_tools( config_filename )
except:
log.exception( "Error loading tools defined in config %s", config_filename )
if self.integrated_tool_panel_config_has_contents:
# Load self.tool_panel based on the order in self.integrated_tool_panel.
self.load_tool_panel()
# Always write the current in-memory integrated_tool_panel to the integrated_tool_panel.xml file.
# This will cover cases where the Galaxy administrator manually edited one or more of the tool panel
# config files, adding or removing locally developed tools or workflows.
self.write_integrated_tool_panel_config_file()
def init_tools( self, config_filename ):
"""
Read the configuration file and load each tool. The following tags are currently supported:
@@ -121,13 +128,6 @@ class ToolBox( object ):
tool_path=tool_path,
config_elems=config_elems )
self.shed_tool_confs.append( shed_tool_conf_dict )
if self.integrated_tool_panel_config_has_contents:
# Load self.tool_panel based on the order in self.integrated_tool_panel.
self.load_tool_panel()
# Always write the current in-memory integrated_tool_panel to the integrated_tool_panel.xml file.
# This will cover cases where the Galaxy administrator manually edited one or more of the tool panel
# config files, adding or removing locally developed tools or workflows.
self.write_integrated_tool_panel_config_file()
def load_tool_panel( self ):
for key, val in self.integrated_tool_panel.items():
if key.startswith( 'tool_' ):