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Trackster external display bundling.

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This commit is contained in:
Dannon Baker
2017-12-12 17:22:24 -05:00
parent 993c0b7341
commit e69c047bd8
2 changed files with 35 additions and 48 deletions
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client/galaxy/scripts/apps/extended.js
+2 -1
View File
@@ -174,7 +174,8 @@ export const bundleEntries = {
History: History.History,
HistoryContents: HistoryContents.HistoryContents,
HistoryCopyDialog,
HistoryViewAnnotated
HistoryViewAnnotated,
Trackster
};
console.debug(bundleEntries);
templates/webapps/galaxy/visualization/display.mako
+33 -47
View File
@@ -18,9 +18,7 @@
<%def name="stylesheets()">
${parent.stylesheets()}
${h.css(
"trackster"
)}
${h.css("trackster")}
## Style changes needed for display.
<style type="text/css">
@@ -53,56 +51,44 @@
<div id="${trans.security.encode_id( visualization.id )}" class="unified-panel-body" style="overflow:none;top:0px;"></div>
<script type="text/javascript">
require.config({
baseUrl: "${h.url_for('/static/scripts') }",
shim: {
"libs/underscore": { exports: "_" },
"libs/backbone": { exports: "Backbone" },
},
urlArgs: 'v=${app.server_starttime}'
});
require( ["viz/trackster"], function(trackster) {
// FIXME: deliberate global required for now due to requireJS integration.
view = null;
// FIXME: deliberate global required for now due to requireJS integration.
view = null;
var ui = new (window.bundleEntries.Trackster.TracksterUI)( "${h.url_for('/')}" );
var container_element = $("#${trans.security.encode_id( visualization.id )}");
var ui = new (trackster.default.TracksterUI)( "${h.url_for('/')}" )
container_element = $("#${trans.security.encode_id( visualization.id )}");
$(function() {
var is_embedded = (container_element.parents(".item-content").length > 0);
$(function() {
var is_embedded = (container_element.parents(".item-content").length > 0);
// HTML setup.
if (is_embedded) {
container_element.css( { "position": "relative" } );
} else { // Viewing just one shared viz
$("#right-border").click(function() { view.resize_window(); });
}
// HTML setup.
if (is_embedded) {
container_element.css( { "position": "relative" } );
} else { // Viewing just one shared viz
$("#right-border").click(function() { view.resize_window(); });
}
// Create visualization.
var callback;
%if 'viewport' in config:
var callback = function() { view.change_chrom( '${config['viewport']['chrom']}', ${config['viewport']['start']}, ${config['viewport']['end']} ); }
%endif
view = ui.create_visualization( {
container: container_element,
name: "${config.get('title') | h}",
vis_id: "${config.get('vis_id')}",
dbkey: "${config.get('dbkey')}"
},
${ h.dumps( config.get( 'viewport', dict() ) ) },
${ h.dumps( config['tracks'] ) },
${ h.dumps( config.get('bookmarks') ) }
);
// Create visualization.
var callback;
%if 'viewport' in config:
var callback = function() { view.change_chrom( '${config['viewport']['chrom']}', ${config['viewport']['start']}, ${config['viewport']['end']} ); }
%endif
view = ui.create_visualization( {
container: container_element,
name: "${config.get('title') | h}",
vis_id: "${config.get('vis_id')}",
dbkey: "${config.get('dbkey')}"
},
${ h.dumps( config.get( 'viewport', dict() ) ) },
${ h.dumps( config['tracks'] ) },
${ h.dumps( config.get('bookmarks') ) }
);
// Set up keyboard navigation.
ui.init_keyboard_nav(view);
// HACK: set viewport height because it cannot be set automatically. Currently, max height for embedded
// elts is 25em, so use 20em.
view.viewport_container.height("20em");
});
// Set up keyboard navigation.
ui.init_keyboard_nav(view);
// HACK: set viewport height because it cannot be set automatically. Currently, max height for embedded
// elts is 25em, so use 20em.
view.viewport_container.height("20em");
});
</script>