mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Nicola Soranzo
@@ -21,7 +21,7 @@ jobs:
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
python-version: ['3.7', '3.10']
|
||||
python-version: ['3.7', '3.11']
|
||||
defaults:
|
||||
run:
|
||||
shell: bash -l {0}
|
||||
|
||||
@@ -21,7 +21,7 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
strategy:
|
||||
matrix:
|
||||
python-version: ['3.7', '3.10']
|
||||
python-version: ['3.7', '3.11']
|
||||
env:
|
||||
LINT_PATH: 'lib/galaxy/dependencies/pinned-lint-requirements.txt'
|
||||
TYPE_PATH: 'lib/galaxy/dependencies/pinned-typecheck-requirements.txt'
|
||||
|
||||
@@ -43,7 +43,7 @@ jobs:
|
||||
path: 'galaxy root/.venv'
|
||||
key: gxy-venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('galaxy root/requirements.txt') }}-api
|
||||
- name: Install dependencies
|
||||
run: ./scripts/common_startup.sh --skip-client-build
|
||||
run: ./scripts/common_startup.sh --dev-wheels --skip-client-build
|
||||
working-directory: 'galaxy root'
|
||||
- name: Lint schema
|
||||
run: make lint-api-schema
|
||||
|
||||
@@ -18,7 +18,7 @@ jobs:
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
python-version: ['3.7', '3.10']
|
||||
python-version: ['3.7', '3.11']
|
||||
defaults:
|
||||
run:
|
||||
shell: bash -l {0}
|
||||
|
||||
@@ -18,7 +18,7 @@ jobs:
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
python-version: ['3.7', '3.10']
|
||||
python-version: ['3.7', '3.11']
|
||||
steps:
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||||
- uses: actions/checkout@v3
|
||||
with:
|
||||
|
||||
@@ -20,7 +20,7 @@ jobs:
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
python-version: ['3.7', '3.10']
|
||||
python-version: ['3.7', '3.11']
|
||||
steps:
|
||||
- uses: actions/checkout@v3
|
||||
with:
|
||||
|
||||
@@ -95,7 +95,7 @@ export function searchToolsByKeys(tools, keys, query) {
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} else {
|
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actualValue = tool[key] ? tool[key].toLowerCase() : "";
|
||||
}
|
||||
const queryLowerCase = query.toLowerCase();
|
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const queryLowerCase = query.trim().toLowerCase();
|
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if (actualValue.match(queryLowerCase)) {
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// do we care for exact matches && is it an exact match ?
|
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const order = keys.exact && actualValue === queryLowerCase ? keys.exact : keys[key];
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|
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@@ -38,7 +38,8 @@ describe("test helpers in tool searching utilities", () => {
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results = searchToolsByKeys(normalizeTools(toolsList), keys, q);
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expect(results).toEqual(expectedResults);
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|
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q = "filter empty datasets";
|
||||
// whitespace precedes to ensure query.trim() works
|
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q = " filter empty datasets";
|
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expectedResults = ["__FILTER_EMPTY_DATASETS__"];
|
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keys = { description: 1, name: 2, combined: 0 };
|
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results = searchToolsByKeys(normalizeTools(toolsList), keys, q);
|
||||
|
||||
@@ -5066,12 +5066,6 @@ export interface components {
|
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)[];
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metadata: components["schemas"]["LibraryFolderMetadata"];
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};
|
||||
/**
|
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* LibraryFolderContentsIndexSortByEnum
|
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* @description An enumeration.
|
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* @enum {string}
|
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*/
|
||||
LibraryFolderContentsIndexSortByEnum: "name" | "description" | "type" | "size" | "update_time";
|
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/**
|
||||
* LibraryFolderCurrentPermissions
|
||||
* @description Base model definition with common configuration used by all derived models.
|
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@@ -7348,12 +7342,6 @@ export interface components {
|
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[key: string]: number | undefined;
|
||||
};
|
||||
};
|
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/**
|
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* WorkflowSortByEnum
|
||||
* @description An enumeration.
|
||||
* @enum {string}
|
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*/
|
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WorkflowSortByEnum: "create_time" | "update_time" | "name" | "None";
|
||||
/**
|
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* WriteInvocationStoreToPayload
|
||||
* @description Base model definition with common configuration used by all derived models.
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@@ -8655,7 +8643,7 @@ export interface operations {
|
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offset?: number;
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search_text?: string;
|
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include_deleted?: boolean;
|
||||
order_by?: components["schemas"]["LibraryFolderContentsIndexSortByEnum"];
|
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order_by?: "name" | "description" | "type" | "size" | "update_time";
|
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sort_desc?: boolean;
|
||||
};
|
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/** @description The user ID that will be used to effectively make this API call. Only admins and designated users can make API calls on behalf of other users. */
|
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@@ -14324,7 +14312,7 @@ export interface operations {
|
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missing_tools?: boolean;
|
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show_published?: boolean;
|
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show_shared?: boolean;
|
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sort_by?: components["schemas"]["WorkflowSortByEnum"];
|
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sort_by?: "create_time" | "update_time" | "name";
|
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sort_desc?: boolean;
|
||||
limit?: number;
|
||||
offset?: number;
|
||||
|
||||
@@ -1,5 +1,5 @@
|
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# These dependencies are only required when certain config options are set
|
||||
psycopg2-binary==2.9.1
|
||||
psycopg2-binary==2.9.5
|
||||
mysqlclient
|
||||
fluent-logger
|
||||
sentry-sdk
|
||||
|
||||
@@ -1,141 +1,143 @@
|
||||
aiohttp==3.8.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
aiosignal==1.3.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
alabaster==0.7.13 ; python_version >= "3.7" and python_version < "3.11"
|
||||
amqp==5.1.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
anyio==3.6.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
ase==3.22.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
async-generator==1.10 ; python_version >= "3.7" and python_version < "3.11"
|
||||
async-timeout==4.0.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
aiohttp==3.8.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
aiosignal==1.3.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
alabaster==0.7.13 ; python_version >= "3.7" and python_version < "3.12"
|
||||
amqp==5.1.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
anyio==3.6.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
ase==3.22.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
async-generator==1.10 ; python_version >= "3.7" and python_version < "3.12"
|
||||
async-timeout==4.0.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
asynctest==0.13.0 ; python_version >= "3.7" and python_version < "3.8"
|
||||
attrs==22.2.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
babel==2.11.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
billiard==3.6.4.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
black==22.12.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
cachecontrol[filecache]==0.12.11 ; python_version >= "3.7" and python_version < "3.11"
|
||||
attrs==22.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
babel==2.11.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
billiard==3.6.4.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
black==22.12.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cachecontrol[filecache]==0.12.11 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cached-property==1.5.2 ; python_version >= "3.7" and python_version < "3.8"
|
||||
celery==5.2.7 ; python_version >= "3.7" and python_version < "3.11"
|
||||
certifi==2022.12.7 ; python_version >= "3.7" and python_version < "3.11"
|
||||
cffi==1.15.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
charset-normalizer==2.1.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
click-didyoumean==0.3.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
click-plugins==1.1.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
click-repl==0.2.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
click==8.1.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
codespell==2.2.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
colorama==0.4.6 ; python_version >= "3.7" and python_version < "3.11" and sys_platform == "win32" or python_version >= "3.7" and python_version < "3.11" and platform_system == "Windows"
|
||||
commonmark==0.9.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
coverage[toml]==7.0.5 ; python_version >= "3.7" and python_version < "3.11"
|
||||
cwltest==2.3.20230108193615 ; python_version >= "3.7" and python_version < "3.11"
|
||||
cycler==0.11.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
darker==1.6.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
defusedxml==0.7.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
deprecated==1.2.13 ; python_version >= "3.7" and python_version < "3.11"
|
||||
docutils==0.16 ; python_version >= "3.7" and python_version < "3.11"
|
||||
celery==5.2.7 ; python_version >= "3.7" and python_version < "3.12"
|
||||
certifi==2022.12.7 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cffi==1.15.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
charset-normalizer==2.1.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
click-didyoumean==0.3.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
click-plugins==1.1.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
click-repl==0.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
click==8.1.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
codespell==2.2.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
colorama==0.4.6 ; python_version >= "3.7" and python_version < "3.12" and sys_platform == "win32" or python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"
|
||||
commonmark==0.9.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
coverage[toml]==7.0.5 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cwltest==2.3.20230108193615 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cycler==0.11.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
darker==1.6.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
defusedxml==0.7.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
deprecated==1.2.13 ; python_version >= "3.7" and python_version < "3.12"
|
||||
docutils==0.16 ; python_version >= "3.7" and python_version < "3.12"
|
||||
exceptiongroup==1.1.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
fluent-logger==0.10.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
fonttools==4.38.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
frozenlist==1.3.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
future==0.18.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
h11==0.14.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
httpcore==0.16.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
httpx==0.23.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
idna==3.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
imagesize==1.4.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
fluent-logger==0.10.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
fonttools==4.38.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
frozenlist==1.3.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
future==0.18.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
h11==0.14.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
httpcore==0.16.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
httpx==0.23.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
idna==3.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
imagesize==1.4.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
importlib-metadata==4.13.0 ; python_version >= "3.7" and python_version < "3.10"
|
||||
iniconfig==2.0.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
isodate==0.6.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
isort==5.11.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
jinja2==3.1.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
junit-xml==1.9 ; python_version >= "3.7" and python_version < "3.11"
|
||||
kiwisolver==1.4.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
kombu==5.2.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
lockfile==0.12.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
lxml==4.9.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
markdown-it-reporter==0.0.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
markdown==3.4.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
markupsafe==2.1.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
matplotlib==3.5.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
mirakuru==2.4.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
mistune==2.0.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
msgpack==1.0.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
multidict==6.0.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
mypy-extensions==0.4.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
numpy==1.21.6 ; python_version >= "3.7" and python_version < "3.11"
|
||||
outcome==1.2.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
packaging==21.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pathspec==0.10.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pillow==9.4.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pkce==1.0.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
platformdirs==2.6.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pluggy==1.0.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
port-for==0.6.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
prettytable==3.6.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
prompt-toolkit==3.0.36 ; python_version >= "3.7" and python_version < "3.11"
|
||||
psutil==5.9.4 ; python_version >= "3.7" and python_version < "3.11" and sys_platform != "cygwin"
|
||||
py==1.11.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pycparser==2.21 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pygithub==1.57 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pygments==2.14.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pyjwt==2.6.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pynacl==1.5.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pyparsing==3.0.9 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pysocks==1.7.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pytest-asyncio==0.20.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pytest-celery==0.0.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pytest-cov==4.0.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pytest-html==3.2.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pytest-json-report==1.5.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pytest-metadata==2.0.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pytest-mock==3.10.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pytest-postgresql==4.1.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pytest-shard==0.1.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pytest==7.2.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
python-dateutil==2.8.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
python-irodsclient==1.1.6 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pytz==2022.7.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
rdflib==6.2.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
recommonmark==0.7.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
requests==2.28.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
responses==0.22.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
rfc3986[idna2008]==1.5.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
iniconfig==2.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
isodate==0.6.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
isort==5.11.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
jinja2==3.1.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
junit-xml==1.9 ; python_version >= "3.7" and python_version < "3.12"
|
||||
kiwisolver==1.4.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
kombu==5.2.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
lockfile==0.12.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
lxml==4.9.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
markdown-it-reporter==0.0.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
markdown==3.4.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
markupsafe==2.1.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
matplotlib==3.5.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
mirakuru==2.4.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
mistune==2.0.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
msgpack==1.0.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
multidict==6.0.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
mypy-extensions==0.4.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
numpy==1.21.6 ; python_version >= "3.7" and python_version < "3.8"
|
||||
numpy==1.24.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
outcome==1.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
packaging==21.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pathspec==0.10.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pillow==9.4.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pkce==1.0.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
platformdirs==2.6.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pluggy==1.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
port-for==0.6.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
prettytable==3.6.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
prompt-toolkit==3.0.36 ; python_version >= "3.7" and python_version < "3.12"
|
||||
psutil==5.9.4 ; python_version >= "3.7" and python_version < "3.12" and sys_platform != "cygwin"
|
||||
py==1.11.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pycparser==2.21 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pygithub==1.57 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pygments==2.14.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyjwt==2.6.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pynacl==1.5.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyparsing==3.0.9 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pysocks==1.7.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pytest-asyncio==0.20.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pytest-celery==0.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pytest-cov==4.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pytest-html==3.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pytest-json-report==1.5.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pytest-metadata==2.0.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pytest-mock==3.10.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pytest-postgresql==4.1.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pytest-shard==0.1.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pytest==7.2.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
python-dateutil==2.8.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
python-irodsclient==1.1.6 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pytz==2022.7.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
rdflib==6.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
recommonmark==0.7.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
requests==2.28.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
responses==0.22.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
rfc3986[idna2008]==1.5.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
ruamel-yaml-clib==0.2.7 ; platform_python_implementation == "CPython" and python_version < "3.11" and python_version >= "3.7"
|
||||
ruamel-yaml==0.17.21 ; python_version >= "3.7" and python_version < "3.11"
|
||||
schema-salad==8.3.20230109181936 ; python_version >= "3.7" and python_version < "3.11"
|
||||
scipy==1.7.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
selenium==4.7.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
seletools==1.3.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
setuptools==66.1.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
six==1.16.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sniffio==1.3.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
snowballstemmer==2.2.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sortedcontainers==2.4.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sphinx-markdown-tables==0.0.17 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sphinx-rtd-theme==1.1.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sphinx==5.3.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sphinxcontrib-applehelp==1.0.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sphinxcontrib-devhelp==1.0.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sphinxcontrib-htmlhelp==2.0.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sphinxcontrib-jsmath==1.0.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sphinxcontrib-qthelp==1.0.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sphinxcontrib-serializinghtml==1.1.5 ; python_version >= "3.7" and python_version < "3.11"
|
||||
statsd==4.0.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
testfixtures==7.0.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
tinydb==4.7.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
toml==0.10.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
tomli==2.0.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
trio-websocket==0.9.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
trio==0.22.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
tuspy==1.0.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
twill==3.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
ruamel-yaml==0.17.21 ; python_version >= "3.7" and python_version < "3.12"
|
||||
schema-salad==8.3.20230109181936 ; python_version >= "3.7" and python_version < "3.12"
|
||||
scipy==1.7.3 ; python_version >= "3.7" and python_version < "3.8"
|
||||
scipy==1.10.0 ; python_version >= "3.8" and python_version < "3.12"
|
||||
selenium==4.7.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
seletools==1.3.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
setuptools==66.1.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
six==1.16.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sniffio==1.3.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
snowballstemmer==2.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sortedcontainers==2.4.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sphinx-markdown-tables==0.0.17 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sphinx-rtd-theme==1.1.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sphinx==5.3.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sphinxcontrib-applehelp==1.0.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sphinxcontrib-devhelp==1.0.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sphinxcontrib-htmlhelp==2.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sphinxcontrib-jsmath==1.0.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sphinxcontrib-qthelp==1.0.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sphinxcontrib-serializinghtml==1.1.5 ; python_version >= "3.7" and python_version < "3.12"
|
||||
statsd==4.0.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
testfixtures==7.0.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tinydb==4.7.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
toml==0.10.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tomli==2.0.1 ; python_version >= "3.7" and python_full_version < "3.11.0a7"
|
||||
trio-websocket==0.9.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
trio==0.22.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tuspy==1.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
twill==3.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
typed-ast==1.5.4 ; python_version < "3.8" and implementation_name == "cpython" and python_version >= "3.7"
|
||||
types-toml==0.10.8.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
typing-extensions==4.4.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
urllib3==1.26.14 ; python_version >= "3.7" and python_version < "3.11"
|
||||
urllib3[socks]==1.26.14 ; python_version >= "3.7" and python_version < "3.11"
|
||||
vine==5.0.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
watchdog==2.2.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
wcwidth==0.2.6 ; python_version >= "3.7" and python_version < "3.11"
|
||||
wrapt==1.14.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
wsproto==1.2.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
yarl==1.8.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
types-toml==0.10.8.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
typing-extensions==4.4.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
urllib3==1.26.14 ; python_version >= "3.7" and python_version < "3.12"
|
||||
urllib3[socks]==1.26.14 ; python_version >= "3.7" and python_version < "3.12"
|
||||
vine==5.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
watchdog==2.2.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
wcwidth==0.2.6 ; python_version >= "3.7" and python_version < "3.12"
|
||||
wrapt==1.14.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
wsproto==1.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
yarl==1.8.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
zipp==3.11.0 ; python_version >= "3.7" and python_version < "3.10"
|
||||
|
||||
@@ -1,198 +1,199 @@
|
||||
--extra-index-url https://wheels.galaxyproject.org/simple
|
||||
|
||||
a2wsgi==1.6.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
adal==1.2.7 ; python_version >= "3.7" and python_version < "3.11"
|
||||
aiofiles==22.1.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
aiohttp==3.8.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
aiosignal==1.3.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
alembic-utils==0.7.8 ; python_version >= "3.7" and python_version < "3.11"
|
||||
alembic==1.9.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
amqp==5.1.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
anyio==3.6.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
apispec==6.0.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
appdirs==1.4.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
arcp==0.2.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
argcomplete==2.0.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
async-timeout==4.0.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
a2wsgi==1.6.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
adal==1.2.7 ; python_version >= "3.7" and python_version < "3.12"
|
||||
aiofiles==22.1.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
aiohttp==3.8.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
aiosignal==1.3.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
alembic-utils==0.7.8 ; python_version >= "3.7" and python_version < "3.12"
|
||||
alembic==1.9.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
amqp==5.1.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
anyio==3.6.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
apispec==6.0.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
appdirs==1.4.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
arcp==0.2.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
argcomplete==2.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
async-timeout==4.0.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
asynctest==0.13.0 ; python_version >= "3.7" and python_version < "3.8"
|
||||
attmap==0.13.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
attrs==22.2.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
babel==2.11.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
bagit-profile==1.3.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
bagit==1.8.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
bcrypt==4.0.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
bdbag==1.6.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
beaker==1.11.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
billiard==3.6.4.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
bioblend==1.0.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
bleach==5.0.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
boltons==21.0.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
boto==2.49.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
bx-python==0.9.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
cachecontrol==0.12.11 ; python_version >= "3.7" and python_version < "3.11"
|
||||
cachecontrol[filecache]==0.12.11 ; python_version >= "3.7" and python_version < "3.11"
|
||||
attmap==0.13.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
attrs==22.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
babel==2.11.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
bagit-profile==1.3.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
bagit==1.8.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
bcrypt==4.0.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
bdbag==1.6.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
beaker==1.11.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
billiard==3.6.4.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
bioblend==1.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
bleach==5.0.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
boltons==21.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
boto==2.49.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
bx-python==0.9.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cachecontrol==0.12.11 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cachecontrol[filecache]==0.12.11 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cached-property==1.5.2 ; python_version >= "3.7" and python_version < "3.8"
|
||||
celery==5.2.7 ; python_version >= "3.7" and python_version < "3.11"
|
||||
certifi==2022.12.7 ; python_version >= "3.7" and python_version < "3.11"
|
||||
cffi==1.15.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
charset-normalizer==2.1.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
cheetah3==3.2.6.post1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
circus==0.18.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
click-didyoumean==0.3.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
click-plugins==1.1.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
click-repl==0.2.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
click==8.1.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
cloudauthz==0.6.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
cloudbridge==3.1.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
colorama==0.4.6 ; python_version >= "3.7" and python_version < "3.11" and platform_system == "Windows"
|
||||
coloredlogs==15.0.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
cryptography==39.0.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
cwl-upgrader==1.2.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
cwl-utils==0.21 ; python_version >= "3.7" and python_version < "3.11"
|
||||
cwltool==3.1.20221109155812 ; python_version >= "3.7" and python_version < "3.11"
|
||||
decorator==5.1.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
defusedxml==0.7.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
deprecation==2.1.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
dictobj==0.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
dnspython==2.3.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
docopt==0.6.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
docutils==0.16 ; python_version >= "3.7" and python_version < "3.11"
|
||||
ecdsa==0.18.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
edam-ontology==1.25.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
email-validator==1.3.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
fastapi-utils==0.2.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
fastapi==0.89.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
flupy==1.2.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
frozenlist==1.3.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
fs==2.4.16 ; python_version >= "3.7" and python_version < "3.11"
|
||||
funcsigs==1.0.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
future==0.18.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
galaxy-sequence-utils==1.1.5 ; python_version >= "3.7" and python_version < "3.11"
|
||||
galaxy2cwl==0.1.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
gravity @ git+https://github.com/galaxyproject/gravity.git@release_1.x ; python_version >= "3.7" and python_version < "3.11"
|
||||
greenlet==2.0.1 ; python_version >= "3.7" and (platform_machine == "aarch64" or platform_machine == "ppc64le" or platform_machine == "x86_64" or platform_machine == "amd64" or platform_machine == "AMD64" or platform_machine == "win32" or platform_machine == "WIN32") and python_version < "3.11"
|
||||
gunicorn==20.1.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
gxformat2==0.17.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
h11==0.14.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
h5py==3.7.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
humanfriendly==10.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
idna==3.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
celery==5.2.7 ; python_version >= "3.7" and python_version < "3.12"
|
||||
certifi==2022.12.7 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cffi==1.15.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
charset-normalizer==2.1.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cheetah3==3.2.6.post1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
circus==0.18.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
click-didyoumean==0.3.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
click-plugins==1.1.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
click-repl==0.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
click==8.1.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cloudauthz==0.6.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cloudbridge==3.1.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
colorama==0.4.6 ; python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"
|
||||
coloredlogs==15.0.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cryptography==39.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cwl-upgrader==1.2.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cwl-utils==0.21 ; python_version >= "3.7" and python_version < "3.12"
|
||||
cwltool==3.1.20221109155812 ; python_version >= "3.7" and python_version < "3.12"
|
||||
decorator==5.1.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
defusedxml==0.7.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
deprecation==2.1.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
dictobj==0.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
dnspython==2.3.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
docopt==0.6.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
docutils==0.16 ; python_version >= "3.7" and python_version < "3.12"
|
||||
ecdsa==0.18.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
edam-ontology==1.25.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
email-validator==1.3.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
fastapi-utils==0.2.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
fastapi==0.89.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
flupy==1.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
frozenlist==1.3.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
fs==2.4.16 ; python_version >= "3.7" and python_version < "3.12"
|
||||
funcsigs==1.0.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
future==0.18.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
galaxy-sequence-utils==1.1.5 ; python_version >= "3.7" and python_version < "3.12"
|
||||
galaxy2cwl==0.1.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
gravity @ git+https://github.com/galaxyproject/gravity.git@release_1.x ; python_version >= "3.7" and python_version < "3.12"
|
||||
greenlet==2.0.1 ; python_version >= "3.7" and (platform_machine == "aarch64" or platform_machine == "ppc64le" or platform_machine == "x86_64" or platform_machine == "amd64" or platform_machine == "AMD64" or platform_machine == "win32" or platform_machine == "WIN32") and python_version < "3.12"
|
||||
gunicorn==20.1.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
gxformat2==0.17.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
h11==0.14.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
h5py==3.8.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
humanfriendly==10.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
idna==3.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
importlib-metadata==4.13.0 ; python_version >= "3.7" and python_version < "3.10"
|
||||
importlib-resources==5.10.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
isa-rwval==0.10.10 ; python_version >= "3.7" and python_version < "3.11"
|
||||
isodate==0.6.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
jinja2==3.1.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
jsonref==1.1.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
jsonschema==4.17.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
kombu==5.2.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
lagom==2.2.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
lockfile==0.12.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
lxml==4.9.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
mako==1.2.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
markdown-it-py==2.1.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
markdown==3.4.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
markupsafe==2.1.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
mdurl==0.1.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
mercurial==6.3.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
mistune==2.0.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
mrcfile==1.4.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
msgpack==1.0.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
multidict==6.0.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
mypy-extensions==0.4.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
networkx==2.5 ; python_version >= "3.7" and python_version < "3.11"
|
||||
nodeenv==1.7.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
numpy==1.21.6 ; python_version >= "3.7" and python_version < "3.11"
|
||||
oauthlib==3.2.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
oyaml==1.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
packaging==21.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
paramiko==3.0.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
parse==1.19.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
parsley==1.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
paste==3.5.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pastedeploy==3.0.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pbr==5.11.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pebble==5.0.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
importlib-resources==5.10.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
isa-rwval==0.10.10 ; python_version >= "3.7" and python_version < "3.12"
|
||||
isodate==0.6.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
jinja2==3.1.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
jsonref==1.1.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
jsonschema==4.17.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
kombu==5.2.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
lagom==2.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
lockfile==0.12.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
lxml==4.9.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
mako==1.2.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
markdown-it-py==2.1.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
markdown==3.4.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
markupsafe==2.1.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
mdurl==0.1.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
mercurial==6.3.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
mistune==2.0.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
mrcfile==1.4.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
msgpack==1.0.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
multidict==6.0.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
mypy-extensions==0.4.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
networkx==2.5 ; python_version >= "3.7" and python_version < "3.12"
|
||||
nodeenv==1.7.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
numpy==1.21.6 ; python_version >= "3.7" and python_version < "3.8"
|
||||
numpy==1.24.1 ; python_version >= "3.8" and python_version < "3.12"
|
||||
oauthlib==3.2.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
oyaml==1.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
packaging==21.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
paramiko==3.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
parse==1.19.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
parsley==1.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
paste==3.5.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pastedeploy==3.0.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pbr==5.11.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pebble==5.0.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pkgutil-resolve-name==1.3.10 ; python_version >= "3.7" and python_version < "3.9"
|
||||
prompt-toolkit==3.0.36 ; python_version >= "3.7" and python_version < "3.11"
|
||||
prov==1.5.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
psutil==5.9.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pulsar-galaxy-lib==0.15.0.dev0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pyasn1==0.4.8 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pycparser==2.21 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pycryptodome==3.16.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pydantic-tes==0.1.5 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pydantic==1.10.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pydantic[email]==1.10.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pydot==1.4.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pyeventsystem==0.1.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pyfaidx==0.7.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pygments==2.14.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pyjwt==2.6.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pykwalify==1.8.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pylibmagic==0.2.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pynacl==1.5.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pyparsing==3.0.9 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pyreadline3==3.4.1 ; sys_platform == "win32" and python_version >= "3.8" and python_version < "3.11"
|
||||
prompt-toolkit==3.0.36 ; python_version >= "3.7" and python_version < "3.12"
|
||||
prov==1.5.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
psutil==5.9.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pulsar-galaxy-lib==0.15.0.dev0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyasn1==0.4.8 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pycparser==2.21 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pycryptodome==3.16.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pydantic-tes==0.1.5 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pydantic==1.10.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pydantic[email]==1.10.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pydot==1.4.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyeventsystem==0.1.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyfaidx==0.7.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pygments==2.14.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyjwt==2.6.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pykwalify==1.8.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pylibmagic==0.2.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pynacl==1.5.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyparsing==3.0.9 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyreadline3==3.4.1 ; sys_platform == "win32" and python_version >= "3.8" and python_version < "3.12"
|
||||
pyreadline==2.1 ; sys_platform == "win32" and python_version < "3.8" and python_version >= "3.7"
|
||||
pyrsistent==0.19.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pysam==0.20.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
python-dateutil==2.8.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
python-jose==3.3.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
python-magic==0.4.27 ; python_version >= "3.7" and python_version < "3.11"
|
||||
python-multipart==0.0.5 ; python_version >= "3.7" and python_version < "3.11"
|
||||
python3-openid==3.2.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pytz==2022.7.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pyyaml==6.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pyzmq==25.0.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
rdflib==6.2.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
refgenconf==0.12.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
repoze-lru==0.7 ; python_version >= "3.7" and python_version < "3.11"
|
||||
requests-oauthlib==1.3.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
requests-toolbelt==0.10.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
requests-unixsocket==0.3.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
requests==2.28.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
rich==13.2.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
rocrate==0.7.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
routes==2.5.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
rsa==4.9 ; python_version >= "3.7" and python_version < "3.11"
|
||||
pyrsistent==0.19.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pysam==0.20.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
python-dateutil==2.8.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
python-jose==3.3.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
python-magic==0.4.27 ; python_version >= "3.7" and python_version < "3.12"
|
||||
python-multipart==0.0.5 ; python_version >= "3.7" and python_version < "3.12"
|
||||
python3-openid==3.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pytz==2022.7.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyyaml==6.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
pyzmq==25.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
rdflib==6.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
refgenconf==0.12.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
repoze-lru==0.7 ; python_version >= "3.7" and python_version < "3.12"
|
||||
requests-oauthlib==1.3.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
requests-toolbelt==0.10.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
requests-unixsocket==0.3.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
requests==2.28.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
rich==13.2.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
rocrate==0.7.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
routes==2.5.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
rsa==4.9 ; python_version >= "3.7" and python_version < "3.12"
|
||||
ruamel-yaml-clib==0.2.7 ; platform_python_implementation == "CPython" and python_version < "3.11" and python_version >= "3.7"
|
||||
ruamel-yaml==0.17.21 ; python_version < "3.11" and python_version >= "3.7"
|
||||
schema-salad==8.3.20230109181936 ; python_version >= "3.7" and python_version < "3.11"
|
||||
setuptools-scm==5.0.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
setuptools==66.1.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
shellescape==3.8.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
six==1.16.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sniffio==1.3.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
social-auth-core[openidconnect]==4.0.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sortedcontainers==2.4.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sqlalchemy-migrate==0.13.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sqlalchemy==1.4.46 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sqlitedict==2.1.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
sqlparse==0.4.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
starlette-context==0.3.5 ; python_version >= "3.7" and python_version < "3.11"
|
||||
starlette==0.22.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
supervisor==4.2.5 ; python_version >= "3.7" and python_version < "3.11"
|
||||
svgwrite==1.4.3 ; python_version >= "3.7" and python_version < "3.11"
|
||||
tempita==0.5.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
tenacity==8.1.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
tifffile==2021.11.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
tinydb==4.7.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
tornado==6.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
tqdm==4.64.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
tuspy==1.0.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
tuswsgi==0.5.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
typing-extensions==4.4.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
tzlocal==2.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
ubiquerg==0.6.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
urllib3==1.26.14 ; python_version >= "3.7" and python_version < "3.11"
|
||||
uvicorn==0.20.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
uvloop==0.17.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
vine==5.0.0 ; python_version >= "3.7" and python_version < "3.11"
|
||||
wcwidth==0.2.6 ; python_version >= "3.7" and python_version < "3.11"
|
||||
webencodings==0.5.1 ; python_version >= "3.7" and python_version < "3.11"
|
||||
webob==1.8.7 ; python_version >= "3.7" and python_version < "3.11"
|
||||
whoosh==2.7.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
yacman==0.8.4 ; python_version >= "3.7" and python_version < "3.11"
|
||||
yarl==1.8.2 ; python_version >= "3.7" and python_version < "3.11"
|
||||
ruamel-yaml==0.17.21 ; python_version < "3.12" and python_version >= "3.7"
|
||||
schema-salad==8.3.20230109181936 ; python_version >= "3.7" and python_version < "3.12"
|
||||
setuptools-scm==5.0.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
setuptools==66.1.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
shellescape==3.8.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
six==1.16.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sniffio==1.3.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
social-auth-core[openidconnect]==4.0.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sortedcontainers==2.4.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sqlalchemy-migrate==0.13.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sqlalchemy==1.4.46 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sqlitedict==2.1.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
sqlparse==0.4.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
starlette-context==0.3.5 ; python_version >= "3.7" and python_version < "3.12"
|
||||
starlette==0.22.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
supervisor==4.2.5 ; python_version >= "3.7" and python_version < "3.12"
|
||||
svgwrite==1.4.3 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tempita==0.5.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tenacity==8.1.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tifffile==2021.11.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tinydb==4.7.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tornado==6.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tqdm==4.64.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tuspy==1.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tuswsgi==0.5.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
typing-extensions==4.4.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
tzlocal==2.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
ubiquerg==0.6.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
urllib3==1.26.14 ; python_version >= "3.7" and python_version < "3.12"
|
||||
uvicorn==0.20.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
uvloop==0.17.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
vine==5.0.0 ; python_version >= "3.7" and python_version < "3.12"
|
||||
wcwidth==0.2.6 ; python_version >= "3.7" and python_version < "3.12"
|
||||
webencodings==0.5.1 ; python_version >= "3.7" and python_version < "3.12"
|
||||
webob==1.8.7 ; python_version >= "3.7" and python_version < "3.12"
|
||||
whoosh==2.7.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
yacman==0.8.4 ; python_version >= "3.7" and python_version < "3.12"
|
||||
yarl==1.8.2 ; python_version >= "3.7" and python_version < "3.12"
|
||||
zipp==3.11.0 ; python_version >= "3.7" and python_version < "3.10"
|
||||
zipstream-new==1.1.8 ; python_version >= "3.7" and python_version < "3.11"
|
||||
zipstream-new==1.1.8 ; python_version >= "3.7" and python_version < "3.12"
|
||||
|
||||
@@ -6,10 +6,13 @@
|
||||
|
||||
set -e
|
||||
|
||||
SUPPORTED_PYTHON_VERSIONS="3.7 3.8 3.9 3.10 3.11"
|
||||
NOT_SUPPORTED_NEXT_PYTHON_VERSION="3.12"
|
||||
|
||||
this_directory="$(cd "$(dirname "$0")" > /dev/null && pwd)"
|
||||
|
||||
usage() {
|
||||
printf "Usage: %s: [-a] [pkg_spec...]\n" ${0##*/} >&2
|
||||
printf "Usage: %s: [-a] [pkg_spec...]\n" "${0##*/}" >&2
|
||||
}
|
||||
|
||||
add=
|
||||
@@ -23,7 +26,7 @@ do
|
||||
;;
|
||||
esac
|
||||
done
|
||||
shift $(($OPTIND - 1))
|
||||
shift $((OPTIND - 1))
|
||||
|
||||
if [ -n "$add" ] && [ $# -eq 0 ]; then
|
||||
printf "When adding (-a), you must provide at least one package specification.\n" >&2
|
||||
@@ -42,6 +45,48 @@ else
|
||||
poetry add -vv --lock "$@"
|
||||
fi
|
||||
|
||||
# Update pinned requirements.
|
||||
poetry export -f requirements.txt --without-hashes --output "$this_directory/pinned-requirements.txt"
|
||||
poetry export --only dev -f requirements.txt --without-hashes --output "$this_directory/dev-requirements.txt"
|
||||
# Update pinned requirements files.
|
||||
PINNED_REQUIREMENTS_FILE=$this_directory/pinned-requirements.txt
|
||||
PINNED_DEV_REQUIREMENTS_FILE=$this_directory/dev-requirements.txt
|
||||
poetry export -f requirements.txt --without-hashes --output "$PINNED_REQUIREMENTS_FILE"
|
||||
poetry export --only dev -f requirements.txt --without-hashes --output "$PINNED_DEV_REQUIREMENTS_FILE"
|
||||
|
||||
# Fix requirements
|
||||
|
||||
latest_package_version_for_python_version () {
|
||||
PIP_INDEX_OUT=$(pip index versions --python-version "$2" "$1")
|
||||
echo "$PIP_INDEX_OUT" | head -n 1 | sed -e 's/.* (\(.*\)).*/\1/'
|
||||
}
|
||||
|
||||
split_requirement () {
|
||||
PACKAGE_NAME=$1
|
||||
|
||||
if ! pip index version --help >/dev/null; then
|
||||
echo "pip >= 21.2.1 required for the 'index' command"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
NEW_REQUIREMENTS=
|
||||
PREVIOUS_LATEST_PACKAGE_VERSION=
|
||||
for PYTHON_VERSION in $SUPPORTED_PYTHON_VERSIONS; do
|
||||
LATEST_PACKAGE_VERSION=$(latest_package_version_for_python_version "$PACKAGE_NAME" "$PYTHON_VERSION")
|
||||
if [ -z "$NEW_REQUIREMENTS" ]; then
|
||||
NEW_REQUIREMENTS="$PACKAGE_NAME==$LATEST_PACKAGE_VERSION ; python_version >= \"$PYTHON_VERSION\""
|
||||
elif [ "$LATEST_PACKAGE_VERSION" != "$PREVIOUS_LATEST_PACKAGE_VERSION" ]; then
|
||||
NEW_REQUIREMENTS="$NEW_REQUIREMENTS and python_version < \"$PYTHON_VERSION\"\n$PACKAGE_NAME==$LATEST_PACKAGE_VERSION ; python_version >= \"$PYTHON_VERSION\""
|
||||
fi
|
||||
PREVIOUS_LATEST_PACKAGE_VERSION=$LATEST_PACKAGE_VERSION
|
||||
done
|
||||
if [ -n "$NOT_SUPPORTED_NEXT_PYTHON_VERSION" ]; then
|
||||
NEW_REQUIREMENTS="$NEW_REQUIREMENTS and python_version < \"$NOT_SUPPORTED_NEXT_PYTHON_VERSION\""
|
||||
fi
|
||||
|
||||
sed -i.orig -e "s/^$PACKAGE_NAME==.*/$NEW_REQUIREMENTS/" "$PINNED_REQUIREMENTS_FILE" "$PINNED_DEV_REQUIREMENTS_FILE"
|
||||
}
|
||||
|
||||
# For some packages there is no recent version that works on all Python versions
|
||||
# supported by Galaxy, so Poetry resorts to an old version that didn't have a
|
||||
# maximum Python version pin. Here we replace any such requirement with multiple
|
||||
# Python-version-specific requirements.
|
||||
split_requirement numpy
|
||||
split_requirement scipy
|
||||
|
||||
@@ -37,10 +37,7 @@ from galaxy.exceptions import (
|
||||
RequestParameterInvalidException,
|
||||
)
|
||||
from galaxy.model.scoped_session import galaxy_scoped_session
|
||||
from galaxy.schema.schema import (
|
||||
LibraryFolderContentsIndexQueryPayload,
|
||||
LibraryFolderContentsIndexSortByEnum,
|
||||
)
|
||||
from galaxy.schema.schema import LibraryFolderContentsIndexQueryPayload
|
||||
from galaxy.security import RBACAgent
|
||||
from galaxy.security.idencoding import IdEncodingHelper
|
||||
|
||||
@@ -57,17 +54,17 @@ class SecurityParams:
|
||||
|
||||
|
||||
LDDA_SORT_COLUMN_MAP = {
|
||||
LibraryFolderContentsIndexSortByEnum.name: lambda ldda, dataset: ldda.name,
|
||||
LibraryFolderContentsIndexSortByEnum.description: lambda ldda, dataset: ldda.message,
|
||||
LibraryFolderContentsIndexSortByEnum.type: lambda ldda, dataset: ldda.extension,
|
||||
LibraryFolderContentsIndexSortByEnum.size: lambda ldda, dataset: dataset.file_size,
|
||||
LibraryFolderContentsIndexSortByEnum.update_time: lambda ldda, dataset: ldda.update_time,
|
||||
"name": lambda ldda, dataset: ldda.name,
|
||||
"description": lambda ldda, dataset: ldda.message,
|
||||
"type": lambda ldda, dataset: ldda.extension,
|
||||
"size": lambda ldda, dataset: dataset.file_size,
|
||||
"update_time": lambda ldda, dataset: ldda.update_time,
|
||||
}
|
||||
|
||||
FOLDER_SORT_COLUMN_MAP = {
|
||||
LibraryFolderContentsIndexSortByEnum.name: lambda folder: folder.name,
|
||||
LibraryFolderContentsIndexSortByEnum.description: lambda folder: folder.description,
|
||||
LibraryFolderContentsIndexSortByEnum.update_time: lambda folder: folder.update_time,
|
||||
"name": lambda folder: folder.name,
|
||||
"description": lambda folder: folder.description,
|
||||
"update_time": lambda folder: folder.update_time,
|
||||
}
|
||||
|
||||
|
||||
|
||||
@@ -1093,11 +1093,7 @@ class ExportHistoryArchivePayload(Model):
|
||||
)
|
||||
|
||||
|
||||
class WorkflowSortByEnum(str, Enum):
|
||||
create_time = "create_time"
|
||||
update_time = "update_time"
|
||||
name = "name"
|
||||
none = None
|
||||
WorkflowSortByEnum = Literal["create_time", "update_time", "name"]
|
||||
|
||||
|
||||
class WorkflowIndexQueryPayload(Model):
|
||||
@@ -2718,12 +2714,7 @@ class LibraryFolderCurrentPermissions(Model):
|
||||
)
|
||||
|
||||
|
||||
class LibraryFolderContentsIndexSortByEnum(str, Enum):
|
||||
name = "name"
|
||||
description = "description"
|
||||
type = "type"
|
||||
size = "size"
|
||||
update_time = "update_time"
|
||||
LibraryFolderContentsIndexSortByEnum = Literal["name", "description", "type", "size", "update_time"]
|
||||
|
||||
|
||||
class LibraryFolderContentsIndexQueryPayload(Model):
|
||||
@@ -2731,7 +2722,7 @@ class LibraryFolderContentsIndexQueryPayload(Model):
|
||||
offset: int = 0
|
||||
search_text: Optional[str] = None
|
||||
include_deleted: Optional[bool] = None
|
||||
order_by: LibraryFolderContentsIndexSortByEnum = LibraryFolderContentsIndexSortByEnum.name
|
||||
order_by: LibraryFolderContentsIndexSortByEnum = "name"
|
||||
sort_desc: Optional[bool] = False
|
||||
|
||||
|
||||
|
||||
@@ -54,7 +54,7 @@ IncludeDeletedQueryParam: Optional[bool] = Query(
|
||||
)
|
||||
|
||||
SortByQueryParam: LibraryFolderContentsIndexSortByEnum = Query(
|
||||
default=LibraryFolderContentsIndexSortByEnum.name,
|
||||
default="name",
|
||||
title="Sort By",
|
||||
description="Sort results by specified field.",
|
||||
)
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -14,6 +14,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Scientific/Engineering :: Bio-Informatics
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
@@ -13,6 +13,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
Topic :: Software Development
|
||||
Topic :: Software Development :: Code Generators
|
||||
Topic :: Software Development :: Testing
|
||||
|
||||
+1
-1
@@ -84,7 +84,7 @@ pykwalify = "*"
|
||||
pylibmagic = "*"
|
||||
pyparsing = "*"
|
||||
pysam = ">=0.20"
|
||||
python = ">=3.7,<3.11" # Keep maximum version strict to appease numpy and scipy
|
||||
python = ">=3.7,<3.12" # Keep maximum version strict to appease numpy and scipy
|
||||
python-dateutil = "*"
|
||||
python-magic = "*"
|
||||
python-multipart = "*" # required to support form parsing in FastAPI/Starlette
|
||||
|
||||
Reference in New Issue
Block a user