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Merge branch 'release_26.0' into dev

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mvdbeek
2026-02-03 15:05:58 +01:00
parent d439a03193 081ca1a041
commit e162e02ce0
25 changed files with 397 additions and 26 deletions
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packages/app/HISTORY.rst
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.. to_doc
---------
26.0.dev0
26.1.dev0
---------
-------------------
25.1.1 (2026-02-03)
-------------------
=========
Bug fixes
=========
* Record input parameter invocation inputs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21452 <https://github.com/galaxyproject/galaxy/pull/21452>`_
* Maintain column definitions on map over by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21468 <https://github.com/galaxyproject/galaxy/pull/21468>`_
* Do not update a user's update_time when an admin archives (and purges) a history by `@natefoo <https://github.com/natefoo>`_ in `#21484 <https://github.com/galaxyproject/galaxy/pull/21484>`_
* Fix subworkflow runs for disconnected required inputs with defaults by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21488 <https://github.com/galaxyproject/galaxy/pull/21488>`_
* Usability fixes for sample sheet selection. by `@jmchilton <https://github.com/jmchilton>`_ in `#21503 <https://github.com/galaxyproject/galaxy/pull/21503>`_
* Fix type annotation for invocation report ``errors`` field by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21508 <https://github.com/galaxyproject/galaxy/pull/21508>`_
* Filter out failed_metadata HDAs from job cache by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21544 <https://github.com/galaxyproject/galaxy/pull/21544>`_
* Fix pulsar with ``rewrite_parameters: false`` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21557 <https://github.com/galaxyproject/galaxy/pull/21557>`_
* Fix Pulsar with ``default_file_action: none`` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21578 <https://github.com/galaxyproject/galaxy/pull/21578>`_
* Fix condor typo by `@gsaudade99 <https://github.com/gsaudade99>`_ in `#21651 <https://github.com/galaxyproject/galaxy/pull/21651>`_
* Fix HTCondor runner unwatching jobs when stopping containers by `@kysrpex <https://github.com/kysrpex>`_ in `#21656 <https://github.com/galaxyproject/galaxy/pull/21656>`_
* Fix option propagation for workflow inputs connected to multiple subworkflows by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21712 <https://github.com/galaxyproject/galaxy/pull/21712>`_
* Add missing filter_failed_collection_1.1.0.xml tool by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21719 <https://github.com/galaxyproject/galaxy/pull/21719>`_
* Strip inline comments in conditional requirements by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21720 <https://github.com/galaxyproject/galaxy/pull/21720>`_
============
Enhancements
============
* Add sample sheet support to many database operation tools by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21465 <https://github.com/galaxyproject/galaxy/pull/21465>`_
* Add database operation tool to convert sample sheets to list collections by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21625 <https://github.com/galaxyproject/galaxy/pull/21625>`_
-------------------
25.1.0 (2025-12-12)
-------------------
packages/auth/HISTORY.rst
+7 -1
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@@ -4,11 +4,17 @@ History
.. to_doc
---------
26.0.dev0
26.1.dev0
---------
-------------------
25.1.1 (2026-02-03)
-------------------
No recorded changes since last release
-------------------
25.1.0 (2025-12-12)
-------------------
packages/config/HISTORY.rst
+26 -1
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@@ -4,11 +4,36 @@ History
.. to_doc
---------
26.0.dev0
26.1.dev0
---------
-------------------
25.1.1 (2026-02-03)
-------------------
=========
Bug fixes
=========
* Use quotes for Galaxy citation bibtex by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#21563 <https://github.com/galaxyproject/galaxy/pull/21563>`_
* Add split paired or unpaired tool to sample tool conf by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#21647 <https://github.com/galaxyproject/galaxy/pull/21647>`_
* Add missing filter_failed_collection_1.1.0.xml tool by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21719 <https://github.com/galaxyproject/galaxy/pull/21719>`_
============
Enhancements
============
* add new datatype for kmindex index data by `@Smeds <https://github.com/Smeds>`_ in `#21429 <https://github.com/galaxyproject/galaxy/pull/21429>`_
* Add Sourmash sig new datatype by `@SaimMomin12 <https://github.com/SaimMomin12>`_ in `#21469 <https://github.com/galaxyproject/galaxy/pull/21469>`_
* Adds object_expires_after_days example usage to sample config by `@davelopez <https://github.com/davelopez>`_ in `#21547 <https://github.com/galaxyproject/galaxy/pull/21547>`_
* Add a few datatypes from the digital humanities domain by `@bgruening <https://github.com/bgruening>`_ in `#21596 <https://github.com/galaxyproject/galaxy/pull/21596>`_
* Add new datatype pg and hg for pangenomics by `@SaimMomin12 <https://github.com/SaimMomin12>`_ in `#21620 <https://github.com/galaxyproject/galaxy/pull/21620>`_
* Add database operation tool to convert sample sheets to list collections by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21625 <https://github.com/galaxyproject/galaxy/pull/21625>`_
* Add new datatypes required for VG tool by `@SaimMomin12 <https://github.com/SaimMomin12>`_ in `#21644 <https://github.com/galaxyproject/galaxy/pull/21644>`_
-------------------
25.1.0 (2025-12-12)
-------------------
packages/data/HISTORY.rst
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@@ -4,11 +4,40 @@ History
.. to_doc
---------
26.0.dev0
26.1.dev0
---------
-------------------
25.1.1 (2026-02-03)
-------------------
=========
Bug fixes
=========
* Sample sheet column fix by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21446 <https://github.com/galaxyproject/galaxy/pull/21446>`_
* Maintain column definitions on map over by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21468 <https://github.com/galaxyproject/galaxy/pull/21468>`_
* Add missing test file for sig datatype by `@SaimMomin12 <https://github.com/SaimMomin12>`_ in `#21473 <https://github.com/galaxyproject/galaxy/pull/21473>`_
* Do not update a user's update_time when an admin archives (and purges) a history by `@natefoo <https://github.com/natefoo>`_ in `#21484 <https://github.com/galaxyproject/galaxy/pull/21484>`_
* Add missing ending newline to test.sig test data file by `@nsoranzo <https://github.com/nsoranzo>`_ in `#21485 <https://github.com/galaxyproject/galaxy/pull/21485>`_
* Usability fixes for sample sheet selection. by `@jmchilton <https://github.com/jmchilton>`_ in `#21503 <https://github.com/galaxyproject/galaxy/pull/21503>`_
* Fix exception message to enable debugging of missing dataset issue. by `@jmchilton <https://github.com/jmchilton>`_ in `#21504 <https://github.com/galaxyproject/galaxy/pull/21504>`_
* Add missing dependencies to ``galaxy-files`` package by `@nsoranzo <https://github.com/nsoranzo>`_ in `#21518 <https://github.com/galaxyproject/galaxy/pull/21518>`_
* Fix job cache collection copy by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21558 <https://github.com/galaxyproject/galaxy/pull/21558>`_
* Fix #21542 - allow workbook bootstrap generation for sample sheet collection types. by `@jmchilton <https://github.com/jmchilton>`_ in `#21584 <https://github.com/galaxyproject/galaxy/pull/21584>`_
* Fix race condition in workflow collection populated state check by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21613 <https://github.com/galaxyproject/galaxy/pull/21613>`_
* Fix collection job state not preserved during history export/import by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21716 <https://github.com/galaxyproject/galaxy/pull/21716>`_
============
Enhancements
============
* Add Sourmash sig new datatype by `@SaimMomin12 <https://github.com/SaimMomin12>`_ in `#21469 <https://github.com/galaxyproject/galaxy/pull/21469>`_
* Add database operation tool to convert sample sheets to list collections by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21625 <https://github.com/galaxyproject/galaxy/pull/21625>`_
-------------------
25.1.0 (2025-12-12)
-------------------
packages/files/HISTORY.rst
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@@ -4,11 +4,24 @@ History
.. to_doc
---------
26.0.dev0
26.1.dev0
---------
-------------------
25.1.1 (2026-02-03)
-------------------
=========
Bug fixes
=========
* Add missing dependencies to ``galaxy-files`` package by `@nsoranzo <https://github.com/nsoranzo>`_ in `#21518 <https://github.com/galaxyproject/galaxy/pull/21518>`_
* Supports Dataverse file access via both persistent and database IDs by `@davelopez <https://github.com/davelopez>`_ in `#21569 <https://github.com/galaxyproject/galaxy/pull/21569>`_
* Harden Dataverse integration by `@davelopez <https://github.com/davelopez>`_ in `#21624 <https://github.com/galaxyproject/galaxy/pull/21624>`_
-------------------
25.1.0 (2025-12-12)
-------------------
packages/job_execution/HISTORY.rst
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@@ -4,11 +4,22 @@ History
.. to_doc
---------
26.0.dev0
26.1.dev0
---------
-------------------
25.1.1 (2026-02-03)
-------------------
=========
Bug fixes
=========
* Fix pulsar with ``rewrite_parameters: false`` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21557 <https://github.com/galaxyproject/galaxy/pull/21557>`_
-------------------
25.1.0 (2025-12-12)
-------------------
packages/job_metrics/HISTORY.rst
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@@ -4,11 +4,17 @@ History
.. to_doc
---------
26.0.dev0
26.1.dev0
---------
-------------------
25.1.1 (2026-02-03)
-------------------
No recorded changes since last release
-------------------
25.1.0 (2025-12-12)
-------------------
packages/meta/HISTORY.rst
+81 -2
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@@ -4,11 +4,90 @@ History
.. to_doc
---------
26.0.dev0
26.1.dev0
---------
-------------------
25.1.1 (2026-02-03)
-------------------
=========
Bug fixes
=========
* Sample sheet column fix by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21446 <https://github.com/galaxyproject/galaxy/pull/21446>`_
* Record input parameter invocation inputs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21452 <https://github.com/galaxyproject/galaxy/pull/21452>`_
* Remove ref and polish release-drafter workflow by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#21467 <https://github.com/galaxyproject/galaxy/pull/21467>`_
* Maintain column definitions on map over by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21468 <https://github.com/galaxyproject/galaxy/pull/21468>`_
* Add missing test file for sig datatype by `@SaimMomin12 <https://github.com/SaimMomin12>`_ in `#21473 <https://github.com/galaxyproject/galaxy/pull/21473>`_
* Remove `release-drafter` workflow and add a release config file to improve generated notes by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#21478 <https://github.com/galaxyproject/galaxy/pull/21478>`_
* Do not update a user's update_time when an admin archives (and purges) a history by `@natefoo <https://github.com/natefoo>`_ in `#21484 <https://github.com/galaxyproject/galaxy/pull/21484>`_
* Add missing ending newline to test.sig test data file by `@nsoranzo <https://github.com/nsoranzo>`_ in `#21485 <https://github.com/galaxyproject/galaxy/pull/21485>`_
* Fix subworkflow runs for disconnected required inputs with defaults by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21488 <https://github.com/galaxyproject/galaxy/pull/21488>`_
* change locuszoom package version to 0.0.7 by `@elmedjadjirayane <https://github.com/elmedjadjirayane>`_ in `#21494 <https://github.com/galaxyproject/galaxy/pull/21494>`_
* Pin release prebuilt client package exactly by `@dannon <https://github.com/dannon>`_ in `#21498 <https://github.com/galaxyproject/galaxy/pull/21498>`_
* Usability fixes for sample sheet selection. by `@jmchilton <https://github.com/jmchilton>`_ in `#21503 <https://github.com/galaxyproject/galaxy/pull/21503>`_
* Fix exception message to enable debugging of missing dataset issue. by `@jmchilton <https://github.com/jmchilton>`_ in `#21504 <https://github.com/galaxyproject/galaxy/pull/21504>`_
* Fix type annotation for invocation report ``errors`` field by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21508 <https://github.com/galaxyproject/galaxy/pull/21508>`_
* Add missing dependencies to ``galaxy-files`` package by `@nsoranzo <https://github.com/nsoranzo>`_ in `#21518 <https://github.com/galaxyproject/galaxy/pull/21518>`_
* Filter out failed_metadata HDAs from job cache by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21544 <https://github.com/galaxyproject/galaxy/pull/21544>`_
* Fix pulsar with ``rewrite_parameters: false`` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21557 <https://github.com/galaxyproject/galaxy/pull/21557>`_
* Fix job cache collection copy by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21558 <https://github.com/galaxyproject/galaxy/pull/21558>`_
* Show "Expires today" instead of "Expires soon" in Expiration Warning by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21560 <https://github.com/galaxyproject/galaxy/pull/21560>`_
* Use quotes for Galaxy citation bibtex by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#21563 <https://github.com/galaxyproject/galaxy/pull/21563>`_
* Supports Dataverse file access via both persistent and database IDs by `@davelopez <https://github.com/davelopez>`_ in `#21569 <https://github.com/galaxyproject/galaxy/pull/21569>`_
* Fix passing user id to preferences by `@guerler <https://github.com/guerler>`_ in `#21576 <https://github.com/galaxyproject/galaxy/pull/21576>`_
* Fix Pulsar with ``default_file_action: none`` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21578 <https://github.com/galaxyproject/galaxy/pull/21578>`_
* Fix #21542 - allow workbook bootstrap generation for sample sheet collection types. by `@jmchilton <https://github.com/jmchilton>`_ in `#21584 <https://github.com/galaxyproject/galaxy/pull/21584>`_
* Add belated deprecation of Python 3.9 support by `@nsoranzo <https://github.com/nsoranzo>`_ in `#21598 <https://github.com/galaxyproject/galaxy/pull/21598>`_
* Fix loading of credentials when associated tools are missing by `@arash77 <https://github.com/arash77>`_ in `#21599 <https://github.com/galaxyproject/galaxy/pull/21599>`_
* Fix race condition in workflow collection populated state check by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21613 <https://github.com/galaxyproject/galaxy/pull/21613>`_
* Harden Dataverse integration by `@davelopez <https://github.com/davelopez>`_ in `#21624 <https://github.com/galaxyproject/galaxy/pull/21624>`_
* Add split paired or unpaired tool to sample tool conf by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#21647 <https://github.com/galaxyproject/galaxy/pull/21647>`_
* Fix secret credential editing and add clear button by `@itisAliRH <https://github.com/itisAliRH>`_ in `#21650 <https://github.com/galaxyproject/galaxy/pull/21650>`_
* Fix condor typo by `@gsaudade99 <https://github.com/gsaudade99>`_ in `#21651 <https://github.com/galaxyproject/galaxy/pull/21651>`_
* Fix HTCondor runner unwatching jobs when stopping containers by `@kysrpex <https://github.com/kysrpex>`_ in `#21656 <https://github.com/galaxyproject/galaxy/pull/21656>`_
* Fix data manager .loc file selection logic by `@jdavcs <https://github.com/jdavcs>`_ in `#21664 <https://github.com/galaxyproject/galaxy/pull/21664>`_
* Fixes storage management check for anonymous users by `@davelopez <https://github.com/davelopez>`_ in `#21680 <https://github.com/galaxyproject/galaxy/pull/21680>`_
* Resets selection filter when loading dialog by `@davelopez <https://github.com/davelopez>`_ in `#21681 <https://github.com/galaxyproject/galaxy/pull/21681>`_
* Fixes duplicated entries in "share with individual users" component by `@davelopez <https://github.com/davelopez>`_ in `#21683 <https://github.com/galaxyproject/galaxy/pull/21683>`_
* Simplify docker build, use node as specified in requirements by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21695 <https://github.com/galaxyproject/galaxy/pull/21695>`_
* Remove Discover Tools button in the workflow tool panel by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#21697 <https://github.com/galaxyproject/galaxy/pull/21697>`_
* Fix option propagation for workflow inputs connected to multiple subworkflows by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21712 <https://github.com/galaxyproject/galaxy/pull/21712>`_
* Fix collection job state not preserved during history export/import by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21716 <https://github.com/galaxyproject/galaxy/pull/21716>`_
* Add missing filter_failed_collection_1.1.0.xml tool by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21719 <https://github.com/galaxyproject/galaxy/pull/21719>`_
* Strip inline comments in conditional requirements by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21720 <https://github.com/galaxyproject/galaxy/pull/21720>`_
* Exclude node_modules at all depths in Docker builds by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21721 <https://github.com/galaxyproject/galaxy/pull/21721>`_
============
Enhancements
============
* add new datatype for kmindex index data by `@Smeds <https://github.com/Smeds>`_ in `#21429 <https://github.com/galaxyproject/galaxy/pull/21429>`_
* Add sample sheet support to many database operation tools by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21465 <https://github.com/galaxyproject/galaxy/pull/21465>`_
* Add Sourmash sig new datatype by `@SaimMomin12 <https://github.com/SaimMomin12>`_ in `#21469 <https://github.com/galaxyproject/galaxy/pull/21469>`_
* Add new jupyter version by `@bgruening <https://github.com/bgruening>`_ in `#21531 <https://github.com/galaxyproject/galaxy/pull/21531>`_
* Adds object_expires_after_days example usage to sample config by `@davelopez <https://github.com/davelopez>`_ in `#21547 <https://github.com/galaxyproject/galaxy/pull/21547>`_
* Add tool credentials system documentation and schema updates by `@arash77 <https://github.com/arash77>`_ in `#21561 <https://github.com/galaxyproject/galaxy/pull/21561>`_
* Add a few datatypes from the digital humanities domain by `@bgruening <https://github.com/bgruening>`_ in `#21596 <https://github.com/galaxyproject/galaxy/pull/21596>`_
* Add new datatype pg and hg for pangenomics by `@SaimMomin12 <https://github.com/SaimMomin12>`_ in `#21620 <https://github.com/galaxyproject/galaxy/pull/21620>`_
* Add database operation tool to convert sample sheets to list collections by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21625 <https://github.com/galaxyproject/galaxy/pull/21625>`_
* Add new datatypes required for VG tool by `@SaimMomin12 <https://github.com/SaimMomin12>`_ in `#21644 <https://github.com/galaxyproject/galaxy/pull/21644>`_
* Document security considerations for using secrets by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#21654 <https://github.com/galaxyproject/galaxy/pull/21654>`_
=============
Other changes
=============
* Update 25.1 release notes with config changes by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#21444 <https://github.com/galaxyproject/galaxy/pull/21444>`_
* Fix 25.1 release month on user facing notes by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#21450 <https://github.com/galaxyproject/galaxy/pull/21450>`_
* Fix sample_sheet column display by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21457 <https://github.com/galaxyproject/galaxy/pull/21457>`_
* Merge 25.1 into master by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#21482 <https://github.com/galaxyproject/galaxy/pull/21482>`_
* Improve tempdir cleanup in integration tests by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21520 <https://github.com/galaxyproject/galaxy/pull/21520>`_
-------------------
25.1.0 (2025-12-12)
-------------------
@@ -181,7 +260,7 @@ Enhancements
* Implement Data Landing Requests by `@jmchilton <https://github.com/jmchilton>`_ in `#20592 <https://github.com/galaxyproject/galaxy/pull/20592>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#20601 <https://github.com/galaxyproject/galaxy/pull/20601>`_
* Improve BreadcrumbHeading and add unit tests by `@itisAliRH <https://github.com/itisAliRH>`_ in `#20618 <https://github.com/galaxyproject/galaxy/pull/20618>`_
* Remove vue-tsc diff comparison from CI by `@dannon <https://github.com/dannon>`_ in `#20620 <https://github.com/galaxyproject/galaxy/pull/20620>`_
* Remove vue-tsc diff comparison from CI by `@dannon <https://github.com/dannon>`_ in `#20620 <https://github.com/galaxyproject/galaxy/pull/20620>`_
* Add a "Debug" (email report) tab to Workflow Invocations by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#20624 <https://github.com/galaxyproject/galaxy/pull/20624>`_
* Clean up code from pyupgrade by `@nsoranzo <https://github.com/nsoranzo>`_ in `#20642 <https://github.com/galaxyproject/galaxy/pull/20642>`_
* Update location of latest tpv shared db by `@nuwang <https://github.com/nuwang>`_ in `#20651 <https://github.com/galaxyproject/galaxy/pull/20651>`_
packages/navigation/HISTORY.rst
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@@ -4,11 +4,17 @@ History
.. to_doc
---------
26.0.dev0
26.1.dev0
---------
-------------------
25.1.1 (2026-02-03)
-------------------
No recorded changes since last release
-------------------
25.1.0 (2025-12-12)
-------------------
packages/objectstore/HISTORY.rst
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@@ -4,11 +4,17 @@ History
.. to_doc
---------
26.0.dev0
26.1.dev0
---------
-------------------
25.1.1 (2026-02-03)
-------------------
No recorded changes since last release
-------------------
25.1.0 (2025-12-12)
-------------------
packages/schema/HISTORY.rst
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@@ -4,11 +4,23 @@ History
.. to_doc
---------
26.0.dev0
26.1.dev0
---------
-------------------
25.1.1 (2026-02-03)
-------------------
=========
Bug fixes
=========
* Usability fixes for sample sheet selection. by `@jmchilton <https://github.com/jmchilton>`_ in `#21503 <https://github.com/galaxyproject/galaxy/pull/21503>`_
* Fix type annotation for invocation report ``errors`` field by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21508 <https://github.com/galaxyproject/galaxy/pull/21508>`_
-------------------
25.1.0 (2025-12-12)
-------------------
packages/selenium/HISTORY.rst
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@@ -4,11 +4,22 @@ History
.. to_doc
---------
26.0.dev0
26.1.dev0
---------
-------------------
25.1.1 (2026-02-03)
-------------------
=========
Bug fixes
=========
* Usability fixes for sample sheet selection. by `@jmchilton <https://github.com/jmchilton>`_ in `#21503 <https://github.com/galaxyproject/galaxy/pull/21503>`_
-------------------
25.1.0 (2025-12-12)
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=========
Bug fixes
=========
* Sample sheet column fix by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21446 <https://github.com/galaxyproject/galaxy/pull/21446>`_
* Record input parameter invocation inputs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21452 <https://github.com/galaxyproject/galaxy/pull/21452>`_
* Maintain column definitions on map over by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21468 <https://github.com/galaxyproject/galaxy/pull/21468>`_
* Fix subworkflow runs for disconnected required inputs with defaults by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21488 <https://github.com/galaxyproject/galaxy/pull/21488>`_
* Fix type annotation for invocation report ``errors`` field by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21508 <https://github.com/galaxyproject/galaxy/pull/21508>`_
* Fix job cache collection copy by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21558 <https://github.com/galaxyproject/galaxy/pull/21558>`_
* Fix option propagation for workflow inputs connected to multiple subworkflows by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21712 <https://github.com/galaxyproject/galaxy/pull/21712>`_
* Fix collection job state not preserved during history export/import by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21716 <https://github.com/galaxyproject/galaxy/pull/21716>`_
============
Enhancements
============
* Add database operation tool to convert sample sheets to list collections by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21625 <https://github.com/galaxyproject/galaxy/pull/21625>`_
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25.1.0 (2025-12-12)
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25.1.1 (2026-02-03)
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=========
Bug fixes
=========
* Sample sheet column fix by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21446 <https://github.com/galaxyproject/galaxy/pull/21446>`_
* Usability fixes for sample sheet selection. by `@jmchilton <https://github.com/jmchilton>`_ in `#21503 <https://github.com/galaxyproject/galaxy/pull/21503>`_
============
Enhancements
============
* Add database operation tool to convert sample sheets to list collections by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21625 <https://github.com/galaxyproject/galaxy/pull/21625>`_
-------------------
25.1.0 (2025-12-12)
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=============
Other changes
=============
* Improve tempdir cleanup in integration tests by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21520 <https://github.com/galaxyproject/galaxy/pull/21520>`_
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25.1.0 (2025-12-12)
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=========
Bug fixes
=========
* Fix data manager .loc file selection logic by `@jdavcs <https://github.com/jdavcs>`_ in `#21664 <https://github.com/galaxyproject/galaxy/pull/21664>`_
============
Enhancements
============
* Document security considerations for using secrets by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#21654 <https://github.com/galaxyproject/galaxy/pull/21654>`_
=============
Other changes
=============
* Improve tempdir cleanup in integration tests by `@mvdbeek <https://github.com/mvdbeek>`_ in `#21520 <https://github.com/galaxyproject/galaxy/pull/21520>`_
-------------------
25.1.0 (2025-12-12)
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Bug fixes
=========
* Do not update a user's update_time when an admin archives (and purges) a history by `@natefoo <https://github.com/natefoo>`_ in `#21484 <https://github.com/galaxyproject/galaxy/pull/21484>`_
* Fix loading of credentials when associated tools are missing by `@arash77 <https://github.com/arash77>`_ in `#21599 <https://github.com/galaxyproject/galaxy/pull/21599>`_
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25.1.0 (2025-12-12)
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