mirror of
https://github.com/galaxyproject/galaxy.git
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Revise label handling in form
This commit is contained in:
guerler
@@ -179,14 +179,13 @@ define(['utils/utils',
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}
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}
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}
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// create input element
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var self = this;
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return new Ui.Input({
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id : 'field-' + input_def.id,
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area : input_def.area,
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onchange : function() {
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self.app.trigger('change');
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onchange : function( new_value ) {
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input_def.onchange ? input_def.onchange( new_value ) : self.app.trigger( 'change' );
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}
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});
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},
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@@ -7,9 +7,8 @@ define(['utils/utils', 'mvc/tool/tool-form-base'],
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// create form view
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var View = ToolFormBase.extend({
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initialize: function(options) {
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// link this
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var self = this;
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this.hasLabelListeners = false;
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this.workflow = options.workflow;
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// link with node representation in workflow module
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this.node = options.node;
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@@ -40,7 +39,6 @@ define(['utils/utils', 'mvc/tool/tool-form-base'],
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// module information for the tool to update the workflow
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// state stored on the client with. User needs to save
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// for this to take effect.
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self.initializeLabelListener();
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self.node.update_field_data(data);
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self.errors(data && data.tool_model)
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}
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@@ -73,29 +71,6 @@ define(['utils/utils', 'mvc/tool/tool-form-base'],
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ToolFormBase.prototype.initialize.call(this, options);
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},
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initializeLabelListener: function() {
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var self = this;
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if(this.hasLabelListeners !== false) {
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return;
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}
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this.hasLabelListeners = [];
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var outputSections = _.where(this.options.inputs, {outputSection: true});
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var labelInputs = outputSections.map(function(entry) {
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var sectionId = entry.id;
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var outputId = entry.outputId;
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var $section = $("#" + sectionId);
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var $labelRow = $section.find(".section-row").first();
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var labelTextInput = $labelRow.find("input")[0];
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$(labelTextInput).bind('input propertychange', function() {
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var newLabel = $(labelTextInput).val();
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var workflow = self.node.app.workflow;
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workflow.attemptUpdateOutputLabel( self.node, outputId, newLabel );
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});
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});
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},
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/** Builds all sub sections
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*/
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_makeSections: function(options){
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@@ -150,6 +125,7 @@ define(['utils/utils', 'mvc/tool/tool-form-base'],
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*/
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_makeSection: function(output_id, datatypes){
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// format datatypes
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var self = this;
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var extensions = [];
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var input_terminal_names = [];
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@@ -188,15 +164,14 @@ define(['utils/utils', 'mvc/tool/tool-form-base'],
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title : 'Configure Output: \'' + output_id + '\'',
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type : 'section',
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flat : true,
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outputSection: true,
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outputId : output_id,
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inputs : [{
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action : 'Label',
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label : 'Label',
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type : 'text',
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value : '',
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ignore : '',
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help : 'This will provide a short name to describe the output - this must be unique across workflows.'
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value : ( output = this.node.getWorkflowOutput( output_id ) ) && output.label || '',
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help : 'This will provide a short name to describe the output - this must be unique across workflows.',
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onchange : function( new_value ) {
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self.workflow.attemptUpdateOutputLabel( self.node, output_id, new_value );
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}
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},{
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action : 'RenameDatasetAction',
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pja_arg : 'newname',
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@@ -267,21 +242,13 @@ define(['utils/utils', 'mvc/tool/tool-form-base'],
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};
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// visit input nodes and enrich by name/value pairs from server data
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var self = this;
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function visit (head, head_list) {
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head_list = head_list || [];
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head_list.push(head);
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for (var i in head.inputs) {
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var input = head.inputs[i];
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var action = input.action;
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if ( action == "Label") {
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var workflowOutput = self.node.getWorkflowOutput(output_id);
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if ( workflowOutput ) {
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input.value = workflowOutput['label'] || '';
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} else{
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input.value = '';
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}
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} else if (action) {
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if (action) {
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// construct identifier as expected by backend
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input.name = 'pja__' + output_id + '__' + input.action;
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if (input.pja_arg) {
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@@ -617,9 +617,7 @@ EditorFormView = Backbone.View.extend({
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// Global state for the whole workflow
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reset: function() {
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if ( this.workflow ) {
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this.workflow.remove_all();
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}
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this.workflow && this.workflow.remove_all();
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this.workflow = Globals.workflow = new Workflow( this, $("#canvas-container") );
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},
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@@ -795,6 +793,7 @@ EditorFormView = Backbone.View.extend({
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if (node.type == 'tool' && Utils.isJSON(text)) {
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var options = JSON.parse(text);
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options.node = node;
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options.workflow = this.workflow;
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options.datatypes = this.datatypes;
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formView = new ToolForm.View(options);
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} else {
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@@ -1 +1 @@
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@@ -1,2 +1,2 @@
|
||||
define(["utils/utils","mvc/ui/ui-misc","mvc/form/form-select-content","mvc/ui/ui-select-library","mvc/ui/ui-select-ftp","mvc/ui/ui-color-picker"],function(a,b,c,d,e,f){return Backbone.Model.extend({types:{text:"_fieldText",select:"_fieldSelect",data_column:"_fieldSelect",genomebuild:"_fieldSelect",data:"_fieldData",data_collection:"_fieldData",integer:"_fieldSlider","float":"_fieldSlider","boolean":"_fieldBoolean",drill_down:"_fieldDrilldown",color:"_fieldColor",hidden:"_fieldHidden",hidden_data:"_fieldHidden",baseurl:"_fieldHidden",library_data:"_fieldLibrary",ftpfile:"_fieldFtp"},initialize:function(a){this.app=a},create:function(a){void 0===a.value&&(a.value=null),void 0===a.default_value&&(a.default_value=a.value);var b=null,c=this.types[a.type];return c&&"function"==typeof this[c]&&(b=this[c].call(this,a)),b||(this.app.incompatible=!0,b=a.options?this._fieldSelect(a):this._fieldText(a),Galaxy.emit.debug("form-parameters::_addRow()","Auto matched field type ("+a.type+").")),void 0!==a.value&&b.value(a.value),b},_fieldData:function(a){var b=this;return new c.View(this.app,{id:"field-"+a.id,extensions:a.extensions,optional:a.optional,multiple:a.multiple,type:a.type,data:a.options,onchange:function(){b.app.trigger("change")}})},_fieldSelect:function(a){if(a.is_workflow)return this._fieldText(a);"data_column"==a.type&&(a.error_text="Missing columns in referenced dataset.");var c=[];for(var d in a.options){var e=a.options[d];c.push({label:e[0],value:e[1]})}var f=b.Select;switch(a.display){case"checkboxes":f=b.Checkbox;break;case"radio":f=b.Radio}var g=this;return new f.View({id:"field-"+a.id,data:c,error_text:a.error_text||"No options available",optional:a.optional&&null===a.default_value,multiple:a.multiple,optional:a.optional,searchable:a.searchable,onchange:function(){g.app.trigger("change")}})},_fieldDrilldown:function(a){if(a.is_workflow)return this._fieldText(a);var c=this;return new b.Drilldown.View({id:"field-"+a.id,data:a.options,display:a.display,onchange:function(){c.app.trigger("change")}})},_fieldText:function(c){if(c.options)if(c.area=c.multiple,a.validate(c.value)){if($.isArray(c.value)){var d="";for(var e in c.value){if(d+=String(c.value[e]),!c.multiple)break;d+="\n"}c.value=d}}else c.value=null;var f=this;return new b.Input({id:"field-"+c.id,area:c.area,onchange:function(){f.app.trigger("change")}})},_fieldSlider:function(a){var c=this;return new b.Slider.View({id:"field-"+a.id,precise:"float"==a.type,is_workflow:a.is_workflow,min:a.min,max:a.max,onchange:function(){c.app.trigger("change")}})},_fieldHidden:function(a){return new b.Hidden({id:"field-"+a.id,info:a.info})},_fieldBoolean:function(a){var c=this;return new b.RadioButton.View({id:"field-"+a.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:function(){c.app.trigger("change")}})},_fieldColor:function(a){var b=this;return new f({id:"field-"+a.id,onchange:function(){b.app.trigger("change")}})},_fieldLibrary:function(a){var b=this;return new d.View({id:"field-"+a.id,optional:a.optional,multiple:a.multiple,onchange:function(){b.app.trigger("change")}})},_fieldFtp:function(a){var b=this;return new e.View({id:"field-"+a.id,optional:a.optional,multiple:a.multiple,onchange:function(){b.app.trigger("change")}})}})});
|
||||
define(["utils/utils","mvc/ui/ui-misc","mvc/form/form-select-content","mvc/ui/ui-select-library","mvc/ui/ui-select-ftp","mvc/ui/ui-color-picker"],function(a,b,c,d,e,f){return Backbone.Model.extend({types:{text:"_fieldText",select:"_fieldSelect",data_column:"_fieldSelect",genomebuild:"_fieldSelect",data:"_fieldData",data_collection:"_fieldData",integer:"_fieldSlider","float":"_fieldSlider","boolean":"_fieldBoolean",drill_down:"_fieldDrilldown",color:"_fieldColor",hidden:"_fieldHidden",hidden_data:"_fieldHidden",baseurl:"_fieldHidden",library_data:"_fieldLibrary",ftpfile:"_fieldFtp"},initialize:function(a){this.app=a},create:function(a){void 0===a.value&&(a.value=null),void 0===a.default_value&&(a.default_value=a.value);var b=null,c=this.types[a.type];return c&&"function"==typeof this[c]&&(b=this[c].call(this,a)),b||(this.app.incompatible=!0,b=a.options?this._fieldSelect(a):this._fieldText(a),Galaxy.emit.debug("form-parameters::_addRow()","Auto matched field type ("+a.type+").")),void 0!==a.value&&b.value(a.value),b},_fieldData:function(a){var b=this;return new c.View(this.app,{id:"field-"+a.id,extensions:a.extensions,optional:a.optional,multiple:a.multiple,type:a.type,data:a.options,onchange:function(){b.app.trigger("change")}})},_fieldSelect:function(a){if(a.is_workflow)return this._fieldText(a);"data_column"==a.type&&(a.error_text="Missing columns in referenced dataset.");var c=[];for(var d in a.options){var e=a.options[d];c.push({label:e[0],value:e[1]})}var f=b.Select;switch(a.display){case"checkboxes":f=b.Checkbox;break;case"radio":f=b.Radio}var g=this;return new f.View({id:"field-"+a.id,data:c,error_text:a.error_text||"No options available",optional:a.optional&&null===a.default_value,multiple:a.multiple,optional:a.optional,searchable:a.searchable,onchange:function(){g.app.trigger("change")}})},_fieldDrilldown:function(a){if(a.is_workflow)return this._fieldText(a);var c=this;return new b.Drilldown.View({id:"field-"+a.id,data:a.options,display:a.display,onchange:function(){c.app.trigger("change")}})},_fieldText:function(c){if(c.options)if(c.area=c.multiple,a.validate(c.value)){if($.isArray(c.value)){var d="";for(var e in c.value){if(d+=String(c.value[e]),!c.multiple)break;d+="\n"}c.value=d}}else c.value=null;var f=this;return new b.Input({id:"field-"+c.id,area:c.area,onchange:function(a){c.onchange?c.onchange(a):f.app.trigger("change")}})},_fieldSlider:function(a){var c=this;return new b.Slider.View({id:"field-"+a.id,precise:"float"==a.type,is_workflow:a.is_workflow,min:a.min,max:a.max,onchange:function(){c.app.trigger("change")}})},_fieldHidden:function(a){return new b.Hidden({id:"field-"+a.id,info:a.info})},_fieldBoolean:function(a){var c=this;return new b.RadioButton.View({id:"field-"+a.id,data:[{label:"Yes",value:"true"},{label:"No",value:"false"}],onchange:function(){c.app.trigger("change")}})},_fieldColor:function(a){var b=this;return new f({id:"field-"+a.id,onchange:function(){b.app.trigger("change")}})},_fieldLibrary:function(a){var b=this;return new d.View({id:"field-"+a.id,optional:a.optional,multiple:a.multiple,onchange:function(){b.app.trigger("change")}})},_fieldFtp:function(a){var b=this;return new e.View({id:"field-"+a.id,optional:a.optional,multiple:a.multiple,onchange:function(){b.app.trigger("change")}})}})});
|
||||
//# sourceMappingURL=../../../maps/mvc/form/form-parameters.js.map
|
||||
@@ -1,2 +1,2 @@
|
||||
define(["utils/utils","mvc/tool/tool-form-base"],function(a,b){var c=b.extend({initialize:function(c){var d=this;return this.hasLabelListeners=!1,this.node=c.node,this.node?(this.post_job_actions=this.node.post_job_actions||{},c=a.merge(c,{text_enable:"Set in Advance",text_disable:"Set at Runtime",narrow:!0,initial_errors:!0,sustain_version:!0,cls:"ui-portlet-narrow",update_url:Galaxy.root+"api/workflows/build_module",update:function(a){d.initializeLabelListener(),d.node.update_field_data(a),d.errors(a&&a.tool_model)}}),a.deepeach(c.inputs,function(b){b.type&&(-1!=["data","data_collection"].indexOf(b.type)?(b.type="hidden",b.info="Data input '"+b.name+"' ("+a.textify(b.extensions&&b.extensions.toString())+")",b.value=null):(b.collapsible_value={__class__:"RuntimeValue"},b.is_workflow=b.options&&0==b.options.length||-1!=["integer","float"].indexOf(b.type)))}),a.deepeach(c.inputs,function(a){"conditional"==a.type&&(a.test_param.collapsible_value=void 0)}),this._makeSections(c),void b.prototype.initialize.call(this,c)):void Galaxy.emit.debug("tool-form-workflow::initialize()","Node not found in workflow.")},initializeLabelListener:function(){var a=this;if(this.hasLabelListeners===!1){this.hasLabelListeners=[];{var b=_.where(this.options.inputs,{outputSection:!0});b.map(function(b){var c=b.id,d=b.outputId,e=$("#"+c),f=e.find(".section-row").first(),g=f.find("input")[0];$(g).bind("input propertychange",function(){var b=$(g).val(),c=a.node.app.workflow;c.attemptUpdateOutputLabel(a.node,d,b)})})}}},_makeSections:function(b){var c=b.inputs,d=b.datatypes;c[a.uid()]={label:"Annotation / Notes",name:"annotation",type:"text",area:!0,help:"Add an annotation or note for this step. It will be shown with the workflow.",value:this.node.annotation};var e=this.node.output_terminals&&Object.keys(this.node.output_terminals)[0];if(e){c[a.uid()]={name:"pja__"+e+"__EmailAction",label:"Email notification",type:"boolean",value:String(Boolean(this.post_job_actions["EmailAction"+e])),ignore:"false",help:"An email notification will be send when the job has completed.",payload:{host:window.location.host}},c[a.uid()]={name:"pja__"+e+"__DeleteIntermediatesAction",label:"Output cleanup",type:"boolean",value:String(Boolean(this.post_job_actions["DeleteIntermediatesAction"+e])),ignore:"false",help:"Delete intermediate outputs if they are not used as input for another job."};for(var f in this.node.output_terminals)c[a.uid()]=this._makeSection(f,d)}},_makeSection:function(a,b){function c(b,d){d=d||[],d.push(b);for(var e in b.inputs){var f=b.inputs[e],h=f.action;if("Label"==h){var i=g.node.getWorkflowOutput(a);f.value=i?i.label||"":""}else if(h){if(f.name="pja__"+a+"__"+f.action,f.pja_arg&&(f.name+="__"+f.pja_arg),f.payload)for(var j in f.payload){var k=f.payload[j];f.payload[f.name+"__"+j]=k,delete k}var l=g.post_job_actions[f.action+a];if(l){for(var m in d)d[m].expanded=!0;f.value=f.pja_arg?l.action_arguments&&l.action_arguments[f.pja_arg]||f.value:"true"}}f.inputs&&c(f,d.slice(0))}}var d=[],e=[];for(key in b)d.push({0:b[key],1:b[key]});for(key in this.node.input_terminals)e.push(this.node.input_terminals[key].name);d.sort(function(a,b){return a.label>b.label?1:a.label<b.label?-1:0}),d.unshift({0:"Sequences",1:"Sequences"}),d.unshift({0:"Roadmaps",1:"Roadmaps"}),d.unshift({0:"Leave unchanged",1:"__empty__"});var f={title:"Configure Output: '"+a+"'",type:"section",flat:!0,outputSection:!0,outputId:a,inputs:[{action:"Label",label:"Label",type:"text",value:"",ignore:"",help:"This will provide a short name to describe the output - this must be unique across workflows."},{action:"RenameDatasetAction",pja_arg:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the output dataset. Click <a href="https://wiki.galaxyproject.org/Learn/AdvancedWorkflow/Variables">here</a> for more information. Valid inputs are: <strong>'+e.join(", ")+"</strong>."},{action:"ChangeDatatypeAction",pja_arg:"newtype",label:"Change datatype",type:"select",ignore:"__empty__",value:"__empty__",options:d,help:"This action will change the datatype of the output to the indicated value."},{action:"TagDatasetAction",pja_arg:"tags",label:"Tags",type:"text",value:"",ignore:"",help:"This action will set tags for the dataset."},{title:"Assign columns",type:"section",flat:!0,inputs:[{action:"ColumnSetAction",pja_arg:"chromCol",label:"Chrom column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"startCol",label:"Start column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"endCol",label:"End column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"strandCol",label:"Strand column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"nameCol",label:"Name column",type:"integer",value:"",ignore:""}],help:"This action will set column assignments in the output dataset. Blank fields are ignored."}]},g=this;return c(f),f}});return{View:c}});
|
||||
define(["utils/utils","mvc/tool/tool-form-base"],function(a,b){var c=b.extend({initialize:function(c){var d=this;return this.workflow=c.workflow,this.node=c.node,this.node?(this.post_job_actions=this.node.post_job_actions||{},c=a.merge(c,{text_enable:"Set in Advance",text_disable:"Set at Runtime",narrow:!0,initial_errors:!0,sustain_version:!0,cls:"ui-portlet-narrow",update_url:Galaxy.root+"api/workflows/build_module",update:function(a){d.node.update_field_data(a),d.errors(a&&a.tool_model)}}),a.deepeach(c.inputs,function(b){b.type&&(-1!=["data","data_collection"].indexOf(b.type)?(b.type="hidden",b.info="Data input '"+b.name+"' ("+a.textify(b.extensions&&b.extensions.toString())+")",b.value=null):(b.collapsible_value={__class__:"RuntimeValue"},b.is_workflow=b.options&&0==b.options.length||-1!=["integer","float"].indexOf(b.type)))}),a.deepeach(c.inputs,function(a){"conditional"==a.type&&(a.test_param.collapsible_value=void 0)}),this._makeSections(c),void b.prototype.initialize.call(this,c)):void Galaxy.emit.debug("tool-form-workflow::initialize()","Node not found in workflow.")},_makeSections:function(b){var c=b.inputs,d=b.datatypes;c[a.uid()]={label:"Annotation / Notes",name:"annotation",type:"text",area:!0,help:"Add an annotation or note for this step. It will be shown with the workflow.",value:this.node.annotation};var e=this.node.output_terminals&&Object.keys(this.node.output_terminals)[0];if(e){c[a.uid()]={name:"pja__"+e+"__EmailAction",label:"Email notification",type:"boolean",value:String(Boolean(this.post_job_actions["EmailAction"+e])),ignore:"false",help:"An email notification will be send when the job has completed.",payload:{host:window.location.host}},c[a.uid()]={name:"pja__"+e+"__DeleteIntermediatesAction",label:"Output cleanup",type:"boolean",value:String(Boolean(this.post_job_actions["DeleteIntermediatesAction"+e])),ignore:"false",help:"Delete intermediate outputs if they are not used as input for another job."};for(var f in this.node.output_terminals)c[a.uid()]=this._makeSection(f,d)}},_makeSection:function(a,b){function c(b,e){e=e||[],e.push(b);for(var f in b.inputs){var g=b.inputs[f],h=g.action;if(h){if(g.name="pja__"+a+"__"+g.action,g.pja_arg&&(g.name+="__"+g.pja_arg),g.payload)for(var i in g.payload){var j=g.payload[i];g.payload[g.name+"__"+i]=j,delete j}var k=d.post_job_actions[g.action+a];if(k){for(var l in e)e[l].expanded=!0;g.value=g.pja_arg?k.action_arguments&&k.action_arguments[g.pja_arg]||g.value:"true"}}g.inputs&&c(g,e.slice(0))}}var d=this,e=[],f=[];for(key in b)e.push({0:b[key],1:b[key]});for(key in this.node.input_terminals)f.push(this.node.input_terminals[key].name);e.sort(function(a,b){return a.label>b.label?1:a.label<b.label?-1:0}),e.unshift({0:"Sequences",1:"Sequences"}),e.unshift({0:"Roadmaps",1:"Roadmaps"}),e.unshift({0:"Leave unchanged",1:"__empty__"});var g={title:"Configure Output: '"+a+"'",type:"section",flat:!0,inputs:[{label:"Label",type:"text",value:(output=this.node.getWorkflowOutput(a))&&output.label||"",help:"This will provide a short name to describe the output - this must be unique across workflows.",onchange:function(b){d.workflow.attemptUpdateOutputLabel(d.node,a,b)}},{action:"RenameDatasetAction",pja_arg:"newname",label:"Rename dataset",type:"text",value:"",ignore:"",help:'This action will rename the output dataset. Click <a href="https://wiki.galaxyproject.org/Learn/AdvancedWorkflow/Variables">here</a> for more information. Valid inputs are: <strong>'+f.join(", ")+"</strong>."},{action:"ChangeDatatypeAction",pja_arg:"newtype",label:"Change datatype",type:"select",ignore:"__empty__",value:"__empty__",options:e,help:"This action will change the datatype of the output to the indicated value."},{action:"TagDatasetAction",pja_arg:"tags",label:"Tags",type:"text",value:"",ignore:"",help:"This action will set tags for the dataset."},{title:"Assign columns",type:"section",flat:!0,inputs:[{action:"ColumnSetAction",pja_arg:"chromCol",label:"Chrom column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"startCol",label:"Start column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"endCol",label:"End column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"strandCol",label:"Strand column",type:"integer",value:"",ignore:""},{action:"ColumnSetAction",pja_arg:"nameCol",label:"Name column",type:"integer",value:"",ignore:""}],help:"This action will set column assignments in the output dataset. Blank fields are ignored."}]};return c(g),g}});return{View:c}});
|
||||
//# sourceMappingURL=../../../maps/mvc/tool/tool-form-workflow.js.map
|
||||
File diff suppressed because one or more lines are too long
Reference in New Issue
Block a user