mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Update Python dependencies
by running `make update-dependencies`.
This commit is contained in:
galaxybot
committed by
github-actions[bot]
github-actions[bot]
parent
349a5daec1
commit
de6bc84c3e
@@ -12,9 +12,9 @@ babel==2.18.0
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backports-asyncio-runner==1.2.0 ; python_full_version < '3.11'
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backports-tarfile==1.2.0 ; python_full_version < '3.12' and platform_machine != 'ppc64le' and platform_machine != 's390x'
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black==26.3.1
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boto3==1.42.70
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botocore==1.42.70
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build==1.4.2
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boto3==1.42.84
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botocore==1.42.84
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build==1.4.3
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cachecontrol==0.14.4
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cachetools==7.0.5
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cattrs==26.1.0
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@@ -47,8 +47,8 @@ frozenlist==1.8.0
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fsspec==2026.3.0
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galaxy-release-util==0.3.2
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gcsfs==2026.3.0
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google-api-core==2.30.2
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google-auth==2.49.1
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google-api-core==2.30.3
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google-auth==2.49.2
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google-auth-oauthlib==1.3.1
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google-cloud-core==2.5.1
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google-cloud-storage==3.10.1
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@@ -56,7 +56,7 @@ google-cloud-storage-control==1.11.0
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google-crc32c==1.8.0
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google-resumable-media==2.8.2
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googleapis-common-protos==1.74.0
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greenlet==3.3.2
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greenlet==3.4.0
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grpc-google-iam-v1==0.14.4
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grpcio==1.80.0
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grpcio-status==1.80.0
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@@ -84,8 +84,8 @@ jsonschema-specifications==2025.9.1
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junit-xml==1.9
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keyring==25.7.0 ; platform_machine != 'ppc64le' and platform_machine != 's390x'
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kiwisolver==1.5.0
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librt==0.8.1 ; platform_python_implementation != 'PyPy'
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lxml==6.0.2
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librt==0.9.0 ; platform_python_implementation != 'PyPy'
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lxml==6.0.3
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markdown-it-py==3.0.0 ; python_full_version < '3.11'
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markdown-it-py==4.0.0 ; python_full_version >= '3.11'
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markdown-it-reporter==0.0.2
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@@ -95,7 +95,7 @@ mdit-py-plugins==0.5.0
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mdurl==0.1.2
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mirakuru==3.0.2
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mistune==3.2.0
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more-itertools==11.0.1 ; platform_machine != 'ppc64le' and platform_machine != 's390x'
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more-itertools==11.0.2 ; platform_machine != 'ppc64le' and platform_machine != 's390x'
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msgpack==1.1.2
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multidict==6.7.1
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mypy==1.20.0
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@@ -114,7 +114,7 @@ pathspec==1.0.4
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pfzy==0.3.4
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pillow==12.2.0
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pkce==1.0.3
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platformdirs==4.9.4
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platformdirs==4.9.6
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playwright==1.58.0
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pluggy==1.6.0
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port-for==1.0.0
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@@ -137,7 +137,7 @@ pyparsing==3.3.2
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pyproject-hooks==1.2.0
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pyshacl==0.31.0
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pysocks==1.7.1
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pytest==9.0.2
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pytest==9.0.3
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pytest-asyncio==1.3.0
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pytest-base-url==2.1.0
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pytest-cov==7.1.0
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@@ -177,7 +177,7 @@ schema-salad==8.9.20260327095315
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scipy==1.15.3 ; python_full_version < '3.11'
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scipy==1.17.1 ; python_full_version >= '3.11'
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secretstorage==3.5.0 ; platform_machine != 'ppc64le' and platform_machine != 's390x' and sys_platform == 'linux'
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selenium==4.41.0
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selenium==4.43.0
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seletools==1.5.0
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six==1.17.0
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sniffio==1.3.1
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@@ -208,8 +208,8 @@ trio==0.33.0
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trio-websocket==0.12.2
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tuspy==1.1.0
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twine==6.2.0
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types-cachetools==6.2.0.20260317
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types-requests==2.33.0.20260402
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types-cachetools==6.2.0.20260408
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types-requests==2.33.0.20260408
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typing-extensions==4.15.0
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typos==1.45.0
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tzdata==2026.1 ; sys_platform == 'win32'
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@@ -4,4 +4,4 @@ flake8-bugbear==25.11.29
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mccabe==0.7.0
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pycodestyle==2.14.0
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pyflakes==3.4.0
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ruff==0.15.9
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ruff==0.15.10
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@@ -3,7 +3,7 @@
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a2wsgi==1.10.10
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adal==1.2.7
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ag-ui-protocol==0.1.15
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aiobotocore==3.3.0
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aiobotocore==3.4.0
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aiofile==3.9.0
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aiofiles==25.1.0
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aiohappyeyeballs==2.6.1
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@@ -14,7 +14,7 @@ alembic==1.18.4
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amqp==5.3.1
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annotated-doc==0.0.4
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annotated-types==0.7.0
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anthropic==0.89.0
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anthropic==0.94.0
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anyio==4.13.0
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apispec==6.10.0
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appdirs==1.4.4
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@@ -36,8 +36,8 @@ bioblend==1.8.0
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bleach==6.3.0
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boltons==25.0.0
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boto==2.49.0
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boto3==1.42.70
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botocore==1.42.70
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boto3==1.42.84
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botocore==1.42.84
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bx-python==0.14.0
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cachecontrol==0.14.4
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cachetools==7.0.5
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@@ -53,7 +53,7 @@ click-plugins==1.1.1.2
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click-repl==0.3.0
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cloudauthz==0.6.0
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cloudbridge==3.2.0
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cohere==5.21.1 ; sys_platform != 'emscripten'
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cohere==6.1.0 ; sys_platform != 'emscripten'
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colorama==0.4.6 ; sys_platform == 'win32'
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coloredlogs==15.0.1
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conda-package-streaming==0.12.0
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@@ -62,7 +62,7 @@ ct3==3.4.0.post5
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cwl-upgrader==1.2.15
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cwl-utils==0.41
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cwltool==3.1.20260315121657
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cyclopts==4.10.1
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cyclopts==4.10.2
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defusedxml==0.7.1
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deprecated==1.3.1
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deprecation==2.1.0
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@@ -82,7 +82,7 @@ exceptiongroup==1.3.1
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executing==2.2.1
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fastapi==0.135.3
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fastavro==1.12.1 ; sys_platform != 'emscripten'
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fastmcp==3.2.0
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fastmcp==3.2.3
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filelock==3.25.2
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fissix==24.4.24
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frozenlist==1.8.0
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@@ -90,13 +90,13 @@ fs==2.4.16
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fsspec==2026.3.0
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future==1.0.0
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genai-prices==0.0.56
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google-api-core==2.30.2
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google-auth==2.49.1
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google-api-core==2.30.3
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google-auth==2.49.2
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google-cloud-batch==0.21.0
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google-genai==1.70.0
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google-genai==1.72.0
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googleapis-common-protos==1.74.0
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gravity==1.2.0
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greenlet==3.3.2 ; platform_machine == 'AMD64' or platform_machine == 'WIN32' or platform_machine == 'aarch64' or platform_machine == 'amd64' or platform_machine == 'ppc64le' or platform_machine == 'win32' or platform_machine == 'x86_64'
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greenlet==3.4.0 ; platform_machine == 'AMD64' or platform_machine == 'WIN32' or platform_machine == 'aarch64' or platform_machine == 'amd64' or platform_machine == 'ppc64le' or platform_machine == 'win32' or platform_machine == 'x86_64'
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griffelib==2.0.2
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groq==1.1.2
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grpcio==1.80.0
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@@ -110,13 +110,13 @@ hf-xet==1.4.3 ; platform_machine == 'AMD64' or platform_machine == 'aarch64' or
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httpcore==1.0.9
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httpx==0.28.1
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httpx-sse==0.4.3
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huggingface-hub==1.9.0
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huggingface-hub==1.10.1
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humanfriendly==10.0
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idna==3.11
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ijson==3.5.0
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importlib-metadata==8.7.1
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importlib-resources==6.5.2 ; python_full_version < '3.12'
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invoke==2.2.1
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invoke==3.0.3
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isa-rwval==0.10.11
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isal==1.8.0
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isodate==0.7.2 ; python_full_version < '3.11'
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@@ -125,7 +125,7 @@ jaraco-context==6.1.2
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jaraco-functools==4.4.0
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jeepney==0.9.0 ; sys_platform == 'linux'
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jinja2==3.1.6
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jiter==0.13.0
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jiter==0.14.0
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jmespath==1.1.0
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jsonpath-python==1.1.5
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jsonref==1.1.0
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@@ -137,9 +137,9 @@ kombu==5.6.2
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lagom==2.7.7
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legacy-cgi==2.6.4 ; python_full_version >= '3.13'
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limits==5.8.0
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logfire==4.31.0
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logfire-api==4.31.0
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lxml==6.0.2
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logfire==4.32.0
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logfire-api==4.32.0
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lxml==6.0.3
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mako==1.3.10
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markdown==3.10.2
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markdown-it-py==3.0.0 ; python_full_version < '3.11'
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@@ -148,11 +148,11 @@ markupsafe==3.0.3
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mcp==1.27.0
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mdurl==0.1.2
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mercurial==7.2.1
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mistralai==2.3.0
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mistralai==2.3.2
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mistune==3.2.0
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more-itertools==11.0.1
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more-itertools==11.0.2
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mrcfile==1.5.4
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msal==1.35.1
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msal==1.36.0
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msgpack==1.1.2
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multidict==6.7.1
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mypy-extensions==1.1.0
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@@ -164,7 +164,7 @@ nodejs-wheel-binaries==22.20.0
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numpy==2.2.6 ; python_full_version < '3.11'
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numpy==2.4.4 ; python_full_version >= '3.11'
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oauthlib==3.3.1
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openai==2.30.0
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openai==2.31.0
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openapi-pydantic==0.5.1
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openpyxl==3.1.5
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opentelemetry-api==1.39.1
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@@ -185,7 +185,7 @@ pastedeploy==3.1.0
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pathable==0.5.0
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pebble==5.2.0
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pillow==12.2.0
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platformdirs==4.9.4
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platformdirs==4.9.6
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prompt-toolkit==3.0.52
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propcache==0.4.1
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proto-plus==1.27.2
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@@ -199,11 +199,11 @@ pyasn1-modules==0.4.2
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pycparser==3.0 ; (implementation_name != 'PyPy' and platform_python_implementation != 'PyPy') or (implementation_name == 'pypy' and platform_python_implementation == 'PyPy')
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pycryptodome==3.23.0
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pydantic==2.12.5
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pydantic-ai==1.77.0
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pydantic-ai-slim==1.77.0
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pydantic-ai==1.80.0
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pydantic-ai-slim==1.80.0
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pydantic-core==2.41.5
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pydantic-evals==1.77.0
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pydantic-graph==1.77.0
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pydantic-evals==1.80.0
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pydantic-graph==1.80.0
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pydantic-handlebars==0.1.0
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pydantic-settings==2.13.1
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pydantic-tes==0.3.0
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@@ -224,7 +224,7 @@ pysam==0.23.3
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python-dateutil==2.9.0.post0
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python-dotenv==1.2.2
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python-magic==0.4.27
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python-multipart==0.0.22
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python-multipart==0.0.26
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python-slugify==8.0.4
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python3-openid==3.2.0
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pytz==2026.1.post1
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@@ -267,7 +267,7 @@ starlette==1.0.0
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starlette-context==0.5.1
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supervisor==4.3.0
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svgwrite==1.4.3
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temporalio==1.24.0
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temporalio==1.25.0
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tenacity==9.1.4
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text-unidecode==1.3
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tifffile==2025.5.10 ; python_full_version < '3.11'
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@@ -281,16 +281,16 @@ tqdm==4.67.3
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tuspy==1.1.0
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tuspyserver==4.2.3
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typer==0.24.1
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types-protobuf==7.34.1.20260403
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types-requests==2.33.0.20260402 ; sys_platform != 'emscripten'
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types-protobuf==6.32.1.20260221
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types-requests==2.33.0.20260408 ; sys_platform != 'emscripten'
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typing-extensions==4.15.0
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typing-inspection==0.4.2
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tzdata==2026.1
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tzlocal==5.3.1
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ubiquerg==0.9.3
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uncalled-for==0.2.0
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uncalled-for==0.3.1
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urllib3==2.6.3
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uvicorn==0.43.0
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uvicorn==0.44.0
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uvloop==0.22.1
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vine==5.1.0
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watchfiles==1.1.1
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@@ -8,8 +8,8 @@ async-timeout==5.0.1 ; python_full_version < '3.11'
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attrs==26.1.0
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axe-selenium-python==2.1.6
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backports-asyncio-runner==1.2.0 ; python_full_version < '3.11'
|
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boto3==1.42.70
|
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botocore==1.42.70
|
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boto3==1.42.84
|
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botocore==1.42.84
|
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cachecontrol==0.14.4
|
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cachetools==7.0.5
|
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cattrs==26.1.0
|
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@@ -36,8 +36,8 @@ fonttools==4.62.1
|
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frozenlist==1.8.0
|
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fsspec==2026.3.0
|
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gcsfs==2026.3.0
|
||||
google-api-core==2.30.2
|
||||
google-auth==2.49.1
|
||||
google-api-core==2.30.3
|
||||
google-auth==2.49.2
|
||||
google-auth-oauthlib==1.3.1
|
||||
google-cloud-core==2.5.1
|
||||
google-cloud-storage==3.10.1
|
||||
@@ -45,7 +45,7 @@ google-cloud-storage-control==1.11.0
|
||||
google-crc32c==1.8.0
|
||||
google-resumable-media==2.8.2
|
||||
googleapis-common-protos==1.74.0
|
||||
greenlet==3.3.2
|
||||
greenlet==3.4.0
|
||||
grpc-google-iam-v1==0.14.4
|
||||
grpcio==1.80.0
|
||||
grpcio-status==1.80.0
|
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@@ -65,8 +65,8 @@ jsonschema==4.26.0
|
||||
jsonschema-specifications==2025.9.1
|
||||
junit-xml==1.9
|
||||
kiwisolver==1.5.0
|
||||
librt==0.8.1 ; platform_python_implementation != 'PyPy'
|
||||
lxml==6.0.2
|
||||
librt==0.9.0 ; platform_python_implementation != 'PyPy'
|
||||
lxml==6.0.3
|
||||
markdown-it-py==3.0.0 ; python_full_version < '3.11'
|
||||
markdown-it-py==4.0.0 ; python_full_version >= '3.11'
|
||||
markupsafe==3.0.3
|
||||
@@ -89,7 +89,7 @@ pathspec==1.0.4
|
||||
pfzy==0.3.4
|
||||
pillow==12.2.0
|
||||
pkce==1.0.3
|
||||
platformdirs==4.9.4
|
||||
platformdirs==4.9.6
|
||||
playwright==1.58.0
|
||||
pluggy==1.6.0
|
||||
port-for==1.0.0
|
||||
@@ -108,7 +108,7 @@ pygments==2.20.0
|
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pyparsing==3.3.2
|
||||
pyshacl==0.31.0
|
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pysocks==1.7.1
|
||||
pytest==9.0.2
|
||||
pytest==9.0.3
|
||||
pytest-asyncio==1.3.0
|
||||
pytest-base-url==2.1.0
|
||||
pytest-cov==7.1.0
|
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@@ -141,7 +141,7 @@ s3transfer==0.16.0
|
||||
schema-salad==8.9.20260327095315
|
||||
scipy==1.15.3 ; python_full_version < '3.11'
|
||||
scipy==1.17.1 ; python_full_version >= '3.11'
|
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selenium==4.41.0
|
||||
selenium==4.43.0
|
||||
seletools==1.5.0
|
||||
six==1.17.0
|
||||
sniffio==1.3.1
|
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@@ -159,8 +159,8 @@ total-perspective-vortex==3.2.0
|
||||
trio==0.33.0
|
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trio-websocket==0.12.2
|
||||
tuspy==1.1.0
|
||||
types-cachetools==6.2.0.20260317
|
||||
types-requests==2.33.0.20260402
|
||||
types-cachetools==6.2.0.20260408
|
||||
types-requests==2.33.0.20260408
|
||||
typing-extensions==4.15.0
|
||||
typos==1.45.0
|
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tzdata==2026.1 ; sys_platform == 'win32'
|
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|
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@@ -1,14 +1,14 @@
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# This file was autogenerated by uv via the following command:
|
||||
# uv export --frozen --no-annotate --no-hashes --only-group=typecheck
|
||||
annotated-types==0.7.0
|
||||
boto3-stubs==1.42.83
|
||||
boto3-stubs==1.42.88
|
||||
botocore-stubs==1.42.41
|
||||
cffi==2.0.0 ; platform_python_implementation != 'PyPy'
|
||||
cryptography==46.0.7
|
||||
librt==0.8.1 ; platform_python_implementation != 'PyPy'
|
||||
librt==0.9.0 ; platform_python_implementation != 'PyPy'
|
||||
lxml-stubs==0.5.1
|
||||
mypy==1.20.0
|
||||
mypy-boto3-s3==1.42.80
|
||||
mypy-boto3-s3==1.42.85
|
||||
mypy-extensions==1.1.0
|
||||
pathspec==1.0.4
|
||||
pycparser==3.0 ; implementation_name != 'PyPy' and platform_python_implementation != 'PyPy'
|
||||
@@ -16,22 +16,22 @@ pydantic==2.12.5
|
||||
pydantic-core==2.41.5
|
||||
tomli==2.4.1 ; python_full_version < '3.11'
|
||||
types-awscrt==0.31.3
|
||||
types-bleach==6.3.0.20260402
|
||||
types-bleach==6.3.0.20260408
|
||||
types-boto==2.49.18.20241019
|
||||
types-contextvars==2.4.7.3
|
||||
types-dataclasses==0.6.6
|
||||
types-docutils==0.22.3.20260322
|
||||
types-html5lib==1.1.11.20260402
|
||||
types-markdown==3.10.2.20260211
|
||||
types-paramiko==4.0.0.20260402
|
||||
types-python-dateutil==2.9.0.20260402
|
||||
types-docutils==0.22.3.20260408
|
||||
types-html5lib==1.1.11.20260408
|
||||
types-markdown==3.10.2.20260408
|
||||
types-paramiko==4.0.0.20260408
|
||||
types-python-dateutil==2.9.0.20260408
|
||||
types-python-slugify==8.0.2.20240310
|
||||
types-pyyaml==6.0.12.20250915
|
||||
types-requests==2.33.0.20260402
|
||||
types-pyyaml==6.0.12.20260408
|
||||
types-requests==2.33.0.20260408
|
||||
types-s3transfer==0.16.0
|
||||
types-setuptools==82.0.0.20260402
|
||||
types-six==1.17.0.20251009
|
||||
types-webencodings==0.5.0.20251108
|
||||
types-setuptools==82.0.0.20260408
|
||||
types-six==1.17.0.20260408
|
||||
types-webencodings==0.5.0.20260408
|
||||
typing-extensions==4.15.0
|
||||
typing-inspection==0.4.2
|
||||
urllib3==2.6.3
|
||||
|
||||
Reference in New Issue
Block a user