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fixed spelling found by @nsoranzo

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This commit is contained in:
Christian-B
2016-02-23 09:04:15 +00:00
parent 132ff18db6
commit de506dec0c
1 changed files with 8 additions and 8 deletions
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lib/galaxy/datatypes/tabular.py
+8 -8
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@@ -876,8 +876,8 @@ class CSV( TabularData ):
This includes CSV, TSV and other dialects understood by the
Python 'csv' module https://docs.python.org/2/library/csv.html
WARNING: This type is BUGGY it is kept purely for backward compatability
It will incorrectly sniff tab seperated files for which the get_meta method fails!
WARNING: This type is BUGGY it is kept purely for backward compatibility
It will incorrectly sniff tab separated files for which the get_meta method fails!
"""
delimiter = ','
file_ext = 'csv' # File extension
@@ -964,7 +964,7 @@ class BaseCSV( CSV ):
# Check we can read header and get columns
header_row = reader.next()
if len(header_row) < 2:
# No columns so not seperated by this dialect.
# No columns so not separated by this dialect.
return False
# check all rows can be read as otherwise set_meta throws an exception
@@ -978,7 +978,7 @@ class BaseCSV( CSV ):
# Check the next row as it is used by set_meta
data_row = reader.next()
if len(data_row) < 2:
# No columns so not seperated by this dialect.
# No columns so not separated by this dialect.
return False
# ignore the length in the rest
for data_row in reader:
@@ -1040,7 +1040,7 @@ class BaseCSV( CSV ):
class ExcelCSV( BaseCSV ):
"""
Comma separated table data.
Only sniffs comma seperated files with at least 2 columns
Only sniffs comma separated files with at least 2 columns
"""
def __init__(self, **kwd):
@@ -1054,10 +1054,10 @@ class ExcelCSV( BaseCSV ):
class ExcelTSV( BaseCSV ):
"""
Comma separated table data.
Only sniff tab seperated files with at least two columns
Only sniff tab separated files with at least two columns
Note: Use of this datatype is optional as the general tabular format will handle most tab seperated files.
This datatye would only be required for dataset with tabs INSIDE double quotes.
Note: Use of this datatype is optional as the general tabular format will handle most tab separated files.
This datatype would only be required for dataset with tabs INSIDE double quotes.
This datatype currently does not support tsv files where the header has one column less to indicate first column is row names
This kind of file is handled fine by tabular.