remove util.getargspec

This commit is contained in:
Matthias Bernt
2021-10-21 10:23:19 +02:00
parent 4d57245836
commit dc34550610
8 changed files with 8 additions and 17 deletions
+1 -1
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@@ -1,11 +1,11 @@
import importlib
import logging
from inspect import getfullargspec
from types import ModuleType
import galaxy.jobs.rules
from galaxy.jobs import stock_rules
from galaxy.jobs.dynamic_tool_destination import map_tool_to_destination
from galaxy.util.getargspec import getfullargspec
from galaxy.util.submodules import import_submodules
from .rule_helper import RuleHelper
+1 -1
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@@ -1,9 +1,9 @@
import logging
import os
import shutil
from inspect import getfullargspec
from galaxy import model, util
from galaxy.util.getargspec import getfullargspec
log = logging.getLogger(__name__)
+1 -2
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@@ -4,7 +4,6 @@ import inspect
from galaxy.tool_util.parser import get_tool_source
from galaxy.util import submodules
from galaxy.util.getargspec import getfullargspec
LEVEL_ALL = "all"
@@ -47,7 +46,7 @@ def lint_tool_source_with(lint_context, tool_source, extra_modules=None):
# Look at the first argument to the linter to decide
# if we should lint the XML description or the abstract
# tool parser object.
first_arg = getfullargspec(value).args[0]
first_arg = inspect.getfullargspec(value).args[0]
if first_arg == "tool_xml":
if tool_xml is None:
# XML linter and non-XML tool, skip for now
@@ -1,8 +1,8 @@
import logging
import sys
from inspect import getfullargspec
from galaxy.util import unicodify
from galaxy.util.getargspec import getfullargspec
log = logging.getLogger(__name__)
-9
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@@ -1,9 +0,0 @@
import inspect
def getfullargspec(func):
try:
return inspect.getfullargspec(func)
except AttributeError:
# on python 2
return inspect.getargspec(func)
+1 -1
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@@ -7,12 +7,12 @@ import inspect
import os
import re
import sys
from inspect import getfullargspec
from typing import Callable, Dict, List, Optional, Union
from urllib.parse import unquote
import pkg_resources
from galaxy.util.getargspec import getfullargspec
from galaxy.util.properties import NicerConfigParser
+1 -1
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@@ -1,5 +1,6 @@
import logging
from functools import wraps
from inspect import getfullargspec
from json import loads
from traceback import format_exc
@@ -17,7 +18,6 @@ from galaxy.util import (
parse_non_hex_float,
unicodify
)
from galaxy.util.getargspec import getfullargspec
from galaxy.util.json import safe_dumps
from galaxy.web.framework import url_for
+2 -1
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@@ -1,3 +1,5 @@
from inspect import getfullargspec
import pytest
from galaxy.tool_util.lint import LintContext
@@ -8,7 +10,6 @@ from galaxy.tool_util.linters import (
)
from galaxy.tool_util.parser.xml import XmlToolSource
from galaxy.util import etree
from galaxy.util.getargspec import getfullargspec
WHITESPACE_IN_VERSIONS_AND_NAMES = """
<tool name=" BWA Mapper " id="bwa tool" version=" 1.0.1 " is_multi_byte="true" display_interface="true" require_login="true" hidden="true">