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Fix for call to object_store.update_from_file for collect primary data in tools/__init__.py.

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Daniel Blankenberg
2012-04-02 10:48:27 -04:00
parent 4bc632aaa8
commit d9cba6dc3e
1 changed files with 2 additions and 2 deletions
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lib/galaxy/tools/__init__.py
+2 -2
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@@ -2180,7 +2180,7 @@ class Tool:
sa_session=self.sa_session )
self.app.security_agent.copy_dataset_permissions( outdata.dataset, child_dataset.dataset )
# Move data from temp location to dataset location
self.app.object_store.update_from_file(child_dataset.dataset, filename, create=True)
self.app.object_store.update_from_file(child_dataset.dataset, file_name=filename, create=True)
self.sa_session.add( child_dataset )
self.sa_session.flush()
child_dataset.set_size()
@@ -2247,7 +2247,7 @@ class Tool:
self.sa_session.add( primary_data )
self.sa_session.flush()
# Move data from temp location to dataset location
self.app.object_store.update_from_file(primary_data.dataset, filename, create=True)
self.app.object_store.update_from_file(primary_data.dataset, file_name=filename, create=True)
primary_data.set_size()
primary_data.name = "%s (%s)" % ( outdata.name, designation )
primary_data.info = outdata.info