Drop repair repository script, uses endpoint that doesn't exist anymore

lib/galaxy/webapps/galaxy/buildapp.py

@@ -1328,7 +1328,6 @@ def populate_api_routes(webapp, app):
         "tool_shed_repository",
         "tool_shed_repositories",
         member={
-            "repair_repository_revision": "POST",
             "import_workflow": "POST",
             "import_workflows": "POST",
         },

scripts/api/repair_tool_shed_repository.py

@@ -1,70 +0,0 @@
-#!/usr/bin/env python
-"""
-Repair a specified repository revision previously installed into Galaxy.
-
-Here is a working example of how to use this script to repair a repository installed into Galaxy.
-./repair_tool_shed_repository.py --api <api key> --local <galaxy base url> --url http://testtoolshed.g2.bx.psu.edu --name gregs_filter --owner greg --revision f28d5018f9cb
-"""
-
-import argparse
-
-from common import (
-    display,
-    submit,
-)
-
-
-def clean_url(url):
-    if url.find("//") > 0:
-        # We have an url that includes a protocol, something like: http://localhost:9009
-        items = url.split("//")
-        return items[1].rstrip("/")
-    return url.rstrip("/")
-
-
-def main(options):
-    """Collect all user data and install the tools via the Galaxy API."""
-    api_key = options.api
-    base_galaxy_url = options.local_url.rstrip("/")
-    base_tool_shed_url = options.tool_shed_url.rstrip("/")
-    cleaned_tool_shed_url = clean_url(base_tool_shed_url)
-    installed_tool_shed_repositories_url = "{}/api/{}".format(base_galaxy_url, "tool_shed_repositories")
-    data = {}
-    data["tool_shed_url"] = cleaned_tool_shed_url
-    data["name"] = options.name
-    data["owner"] = options.owner
-    data["changeset_revision"] = options.changeset_revision
-    tool_shed_repository_id = None
-    installed_tool_shed_repositories = display(api_key, installed_tool_shed_repositories_url, return_formatted=False)
-    for installed_tool_shed_repository in installed_tool_shed_repositories:
-        tool_shed = str(installed_tool_shed_repository["tool_shed"])
-        name = str(installed_tool_shed_repository["name"])
-        owner = str(installed_tool_shed_repository["owner"])
-        changeset_revision = str(installed_tool_shed_repository["changeset_revision"])
-        if (
-            tool_shed == cleaned_tool_shed_url
-            and name == options.name
-            and owner == options.owner
-            and changeset_revision == options.changeset_revision
-        ):
-            tool_shed_repository_id = installed_tool_shed_repository["id"]
-            break
-    if tool_shed_repository_id:
-        url = "{}{}".format(
-            base_galaxy_url, "/api/tool_shed_repositories/%s/repair_repository_revision" % str(tool_shed_repository_id)
-        )
-        submit(options.api, url, data)
-    else:
-        print("Invalid tool_shed / name / owner / changeset_revision.")
-
-
-if __name__ == "__main__":
-    parser = argparse.ArgumentParser(description="Installation of tool shed repositories via the Galaxy API.")
-    parser.add_argument("-u", "--url", dest="tool_shed_url", required=True, help="Tool Shed URL")
-    parser.add_argument("-a", "--api", dest="api", required=True, help="API Key")
-    parser.add_argument("-l", "--local", dest="local_url", required=True, help="URL of the galaxy instance.")
-    parser.add_argument("-n", "--name", required=True, help="Repository name.")
-    parser.add_argument("-o", "--owner", required=True, help="Repository owner.")
-    parser.add_argument("-r", "--revision", dest="changeset_revision", required=True, help="Repository owner.")
-    options = parser.parse_args()
-    main(options)