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Merge pull request #3661 from lecorguille/datatype_mzdata

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add the mzData datatype
This commit is contained in:
Björn Grüning
2017-02-24 16:50:59 +01:00
committed by GitHub
parent 73c444eaf4 036df2ac20
commit d5e4dc4753
2 changed files with 9 additions and 0 deletions
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config/datatypes_conf.xml.sample
+1
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@@ -218,6 +218,7 @@
<datatype extension="mgf" type="galaxy.datatypes.proteomics:Mgf" display_in_upload="true" />
<datatype extension="wiff" type="galaxy.datatypes.proteomics:Wiff" display_in_upload="true" />
<datatype extension="mzxml" type="galaxy.datatypes.proteomics:MzXML" mimetype="application/xml" display_in_upload="true" />
<datatype extension="mzdata" type="galaxy.datatypes.proteomics:MzData" mimetype="application/xml" display_in_upload="true" />
<datatype extension="ms2" type="galaxy.datatypes.proteomics:Ms2" display_in_upload="true" />
<datatype extension="mzq" type="galaxy.datatypes.proteomics:MzQuantML" mimetype="application/xml" display_in_upload="true" />
<datatype extension="mz.sqlite" type="galaxy.datatypes.binary:MzSQlite" mimetype="application/octet-stream" display_in_upload="true" />
lib/galaxy/datatypes/proteomics.py
+8
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@@ -152,6 +152,14 @@ class MzXML(ProteomicsXml):
root = "mzXML"
class MzData(ProteomicsXml):
"""mzData data"""
edam_format = "format_3245"
file_ext = "mzdata"
blurb = "mzData Mass Spectrometry data"
root = "mzData"
class MzIdentML(ProteomicsXml):
edam_format = "format_3247"
file_ext = "mzid"