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update config file for megablast wrapper.

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also update tool version to 2.0.0 because the output is different.
This commit is contained in:
Wen-Yu Chung
2008-03-10 21:26:43 +00:00
parent a39024b89d
commit d4c676d085
1 changed files with 4 additions and 4 deletions
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tools/metag_tools/megablast_wrapper.xml
+4 -4
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@@ -1,11 +1,11 @@
<tool id="megablast_wrapper" name="Run Megablast">
<tool id="megablast_wrapper" name="Run Megablast" version="2.0.0">
<description>for Metagenomics Projects</description>
<command interpreter="python">megablast_wrapper.py $source_select $input_query $output1 $word_size $iden_cutoff $disc_word $disc_type $filter_query</command>
<inputs>
<param name="input_query" type="data" format="fasta" label="Query Sequence"/>
<param name="source_select" type="select" display="radio" label="Target database">
<option value="nt">nt (for nucleotides)</option>
<option value="test">Ecoli_K12</option>
<option value="nt">nt (for nucleotides)</option>
</param>
<param name="word_size" type="select" label="Word size (-W, length of best perfect match)">
<option value="28">28</option>
@@ -28,14 +28,14 @@
</outputs>
<tests>
<test>
<param name="input_query" value="megablast_query.fa" ftype="fasta"/>
<param name="input_query" value="megablast_wrapper_test1.fa" ftype="fasta"/>
<param name="source_select" value="test" />
<param name="word_size" value="28" />
<param name="iden_cutoff" value="99.0" />
<param name="disc_word" value="0" />
<param name="disc_type" value="0" />
<param name="filter_query" value="T" />
<output name="output1" file="megablast_test.out"/>
<output name="output1" file="megablast_wrapper_test1.out"/>
</test>
</tests>
<help>