mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
convert to arrow functions, eliminate self and that
This commit is contained in:
@@ -4,12 +4,14 @@ import mod_toastr from "libs/toastr";
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import mod_library_model from "mvc/library/library-model";
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import mod_select from "mvc/ui/ui-select";
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import "libs/jquery/jstree";
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var FolderToolbarView = Backbone.View.extend({
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el: "#center",
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events: {
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"click #toolbtn_create_folder": "createFolderFromModal",
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"click #toolbtn_bulk_import": "modalBulkImport",
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"click #toolbtn_bulk_import": "historyImportModal",
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"click #include_deleted_datasets_chk": "checkIncludeDeleted",
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"click #toolbtn_bulk_delete": "deleteSelectedItems",
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"click .toolbtn-show-locinfo": "showLocInfo",
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@@ -141,9 +143,6 @@ var FolderToolbarView = Backbone.View.extend({
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createFolderFromModal: function(event) {
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event.preventDefault();
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event.stopPropagation();
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// create modal
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var self = this;
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var template = this.templateNewFolderInModal();
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this.modal = Galaxy.modal;
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this.modal.show({
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@@ -151,10 +150,10 @@ var FolderToolbarView = Backbone.View.extend({
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title: _l("Create New Folder"),
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body: template(),
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buttons: {
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Create: function() {
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self.create_new_folder_event();
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Create: () => {
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this.create_new_folder_event();
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},
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Close: function() {
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Close: () => {
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Galaxy.modal.hide();
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}
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}
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@@ -210,30 +209,29 @@ var FolderToolbarView = Backbone.View.extend({
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return folderDetails.name !== "";
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},
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// show bulk import modal
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modalBulkImport: function() {
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// show history import modal
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historyImportModal: function() {
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var $checkedValues = this.findCheckedRows();
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if ($checkedValues.length === 0) {
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mod_toastr.info("You must select some datasets first.");
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} else {
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var that = this;
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this.histories = new mod_library_model.GalaxyHistories();
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this.histories
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.fetch()
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.done(() => {
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var template = that.templateBulkImportInModal();
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that.modal = Galaxy.modal;
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that.modal.show({
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var template = this.templateBulkImportInModal();
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this.modal = Galaxy.modal;
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this.modal.show({
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closing_events: true,
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title: _l("Import into History"),
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body: template({
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histories: that.histories.models
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histories: this.histories.models
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}),
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buttons: {
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Import: function() {
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that.importAllIntoHistory();
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Import: () => {
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this.importAllIntoHistory();
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},
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Close: function() {
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Close: () => {
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Galaxy.modal.hide();
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}
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}
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@@ -255,20 +253,19 @@ var FolderToolbarView = Backbone.View.extend({
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importAllIntoHistory: function() {
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this.modal.disableButton("Import");
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var new_history_name = this.modal.$("input[name=history_name]").val();
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var that = this;
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if (new_history_name !== "") {
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$.post(`${Galaxy.root}api/histories`, {
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name: new_history_name
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})
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.done(new_history => {
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that.options.last_used_history_id = new_history.id;
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that.processImportToHistory(new_history.id, new_history.name);
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this.options.last_used_history_id = new_history.id;
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this.processImportToHistory(new_history.id, new_history.name);
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})
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.fail((xhr, status, error) => {
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mod_toastr.error("An error occurred.");
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})
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.always(() => {
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that.modal.enableButton("Import");
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this.modal.enableButton("Import");
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});
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} else {
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var history_id = $("select[name=dataset_import_bulk] option:selected").val();
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@@ -371,7 +368,7 @@ var FolderToolbarView = Backbone.View.extend({
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data = typeof data === "string" ? data : $.param(data);
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// split params into form inputs
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var inputs = "";
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$.each(data.split("&"), function() {
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$.each(data.split("&"), () => {
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var pair = this.split("=");
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inputs += `<input type="hidden" name="${pair[0]}" value="${pair[1]}" />`;
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});
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@@ -388,33 +385,32 @@ var FolderToolbarView = Backbone.View.extend({
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addFilesFromHistoryModal: function() {
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this.histories = new mod_library_model.GalaxyHistories();
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var self = this;
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this.histories
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.fetch()
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.done(() => {
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self.modal = Galaxy.modal;
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var template_modal = self.templateAddFilesFromHistory();
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self.modal.show({
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this.modal = Galaxy.modal;
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var template_modal = this.templateAddFilesFromHistory();
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this.modal.show({
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closing_events: true,
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title: _l("Adding datasets from your history"),
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body: template_modal({
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histories: self.histories.models
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histories: this.histories.models
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}),
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buttons: {
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Add: function() {
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self.addAllDatasetsFromHistory();
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Add: () => {
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this.addAllDatasetsFromHistory();
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},
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Close: function() {
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Close: () => {
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Galaxy.modal.hide();
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}
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},
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closing_callback: function() {
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Galaxy.libraries.library_router.navigate(`folders/${self.id}`, { trigger: true });
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closing_callback: () => {
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Galaxy.libraries.library_router.navigate(`folders/${this.id}`, { trigger: true });
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}
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});
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self.fetchAndDisplayHistoryContents(self.histories.models[0].id);
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this.fetchAndDisplayHistoryContents(this.histories.models[0].id);
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$("#dataset_add_bulk").change(event => {
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self.fetchAndDisplayHistoryContents(event.target.value);
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this.fetchAndDisplayHistoryContents(event.target.value);
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});
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})
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.fail((model, response) => {
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@@ -431,7 +427,6 @@ var FolderToolbarView = Backbone.View.extend({
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* This feature is admin-only.
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*/
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importFilesFromPathModal: function() {
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var that = this;
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this.modal = Galaxy.modal;
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var template_modal = this.templateImportPathModal();
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this.modal.show({
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@@ -439,16 +434,16 @@ var FolderToolbarView = Backbone.View.extend({
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title: _l("Please enter paths to import"),
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body: template_modal({}),
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buttons: {
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Import: function() {
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that.importFromPathsClicked(that);
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Import: () => {
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this.importFromPathsClicked(this);
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},
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Close: function() {
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Close: () => {
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Galaxy.modal.hide();
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}
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},
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closing_callback: function() {
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closing_callback: () => {
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// TODO: should not trigger routes outside of the router
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Galaxy.libraries.library_router.navigate(`folders/${that.id}`, {
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Galaxy.libraries.library_router.navigate(`folders/${this.id}`, {
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trigger: true
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});
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}
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@@ -461,35 +456,34 @@ var FolderToolbarView = Backbone.View.extend({
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* and save them sorted in arrays.
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*/
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fetchExtAndGenomes: function() {
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var that = this;
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mod_utils.get({
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url: `${Galaxy.root}api/datatypes?extension_only=False`,
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success: function(datatypes) {
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that.list_extensions = [];
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success: datatypes => {
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this.list_extensions = [];
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for (var key in datatypes) {
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that.list_extensions.push({
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this.list_extensions.push({
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id: datatypes[key].extension,
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text: datatypes[key].extension,
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description: datatypes[key].description,
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description_url: datatypes[key].description_url
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});
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}
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that.list_extensions.sort((a, b) => (a.id > b.id ? 1 : a.id < b.id ? -1 : 0));
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that.list_extensions.unshift(that.auto);
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this.list_extensions.sort((a, b) => (a.id > b.id ? 1 : a.id < b.id ? -1 : 0));
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this.list_extensions.unshift(this.auto);
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},
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cache: true
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});
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mod_utils.get({
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url: `${Galaxy.root}api/genomes`,
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success: function(genomes) {
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that.list_genomes = [];
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success: genomes => {
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this.list_genomes = [];
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for (var key in genomes) {
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that.list_genomes.push({
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this.list_genomes.push({
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id: genomes[key][1],
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text: genomes[key][0]
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});
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}
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that.list_genomes.sort((a, b) => (a.id > b.id ? 1 : a.id < b.id ? -1 : 0));
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this.list_genomes.sort((a, b) => (a.id > b.id ? 1 : a.id < b.id ? -1 : 0));
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},
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cache: true
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});
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@@ -500,16 +494,15 @@ var FolderToolbarView = Backbone.View.extend({
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// See this.fetchExtAndGenomes()
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// TODO switch to common resources:
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// https://trello.com/c/dIUE9YPl/1933-ui-common-resources-and-data-into-galaxy-object
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var that = this;
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this.select_genome = new mod_select.View({
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css: "library-genome-select",
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data: that.list_genomes,
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data: this.list_genomes,
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container: Galaxy.modal.$el.find("#library_genome_select"),
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value: "?"
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});
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this.select_extension = new mod_select.View({
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css: "library-extension-select",
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data: that.list_extensions,
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data: this.list_extensions,
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container: Galaxy.modal.$el.find("#library_extension_select"),
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value: "auto"
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});
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@@ -520,7 +513,6 @@ var FolderToolbarView = Backbone.View.extend({
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* on Galaxy. Bind jQuery events.
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*/
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importFilesFromGalaxyFolderModal: function(options) {
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var that = this;
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var template_modal = this.templateBrowserModal();
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this.modal = Galaxy.modal;
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this.modal.show({
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@@ -528,16 +520,16 @@ var FolderToolbarView = Backbone.View.extend({
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title: _l("Please select folders or files"),
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body: template_modal({}),
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buttons: {
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Import: function() {
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that.importFromJstreePath(that, options);
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Import: () => {
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this.importFromJstreePath(this, options);
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},
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Close: function() {
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Close: () => {
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Galaxy.modal.hide();
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}
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},
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closing_callback: function() {
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closing_callback: () => {
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// TODO: should not trigger routes outside of the router
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Galaxy.libraries.library_router.navigate(`folders/${that.id}`, {
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Galaxy.libraries.library_router.navigate(`folders/${this.id}`, {
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trigger: true
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});
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}
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@@ -557,7 +549,7 @@ var FolderToolbarView = Backbone.View.extend({
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$("input[type=radio]").change(event => {
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if (event.target.value === "jstree-disable-folders") {
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options.disabled_jstree_element = "folders";
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that.renderJstree(options);
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this.renderJstree(options);
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$(".jstree-folders-message").hide();
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$(".jstree-preserve-structure").hide();
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$(".jstree-files-message").show();
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@@ -566,7 +558,7 @@ var FolderToolbarView = Backbone.View.extend({
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$(".jstree-folders-message").show();
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$(".jstree-preserve-structure").show();
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options.disabled_jstree_element = "files";
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that.renderJstree(options);
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this.renderJstree(options);
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}
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});
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},
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@@ -578,14 +570,13 @@ var FolderToolbarView = Backbone.View.extend({
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* @param {[type]} options [description]
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*/
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renderJstree: function(options) {
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var that = this;
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this.options = _.extend(this.options, options);
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var target = options.source || "userdir";
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var disabled_jstree_element = this.options.disabled_jstree_element;
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this.jstree = new mod_library_model.Jstree();
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this.jstree.url = `${this.jstree.urlRoot}?target=${target}&format=jstree&disable=${disabled_jstree_element}`;
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this.jstree.fetch({
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success: function(model, response) {
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success: (model, response) => {
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$("#jstree_browser").jstree("destroy");
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$("#jstree_browser").jstree({
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core: {
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@@ -605,7 +596,7 @@ var FolderToolbarView = Backbone.View.extend({
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}
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});
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},
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error: function(model, response) {
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error: (model, response) => {
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if (typeof response.responseJSON !== "undefined") {
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if (response.responseJSON.err_code === 404001) {
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mod_toastr.warning(response.responseJSON.err_msg);
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@@ -769,24 +760,23 @@ var FolderToolbarView = Backbone.View.extend({
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var history_contents = new mod_library_model.HistoryContents({
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id: history_id
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});
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var self = this;
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history_contents.fetch({
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success: function(history_contents) {
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var history_contents_template = self.templateHistoryContents();
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self.histories.get(history_id).set({ contents: history_contents });
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self.modal.$el.find("#selected_history_content").html(
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success: history_contents => {
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var history_contents_template = this.templateHistoryContents();
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this.histories.get(history_id).set({ contents: history_contents });
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this.modal.$el.find("#selected_history_content").html(
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history_contents_template({
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history_contents: history_contents.models.reverse()
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})
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);
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self.modal.$el.find(".history-import-select-all").bind("click", () => {
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this.modal.$el.find(".history-import-select-all").bind("click", () => {
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$("#selected_history_content [type=checkbox]").prop("checked", true);
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});
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self.modal.$el.find(".history-import-unselect-all").bind("click", () => {
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this.modal.$el.find(".history-import-unselect-all").bind("click", () => {
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$("#selected_history_content [type=checkbox]").prop("checked", false);
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});
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},
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error: function(model, response) {
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error: (model, response) => {
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if (typeof response.responseJSON !== "undefined") {
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mod_toastr.error(response.responseJSON.err_msg);
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} else {
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@@ -808,7 +798,7 @@ var FolderToolbarView = Backbone.View.extend({
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mod_toastr.info("You must select some datasets first.");
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} else {
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this.modal.disableButton("Add");
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checked_hdas.each(function() {
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checked_hdas.each(() => {
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var hid = $(this)
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.closest("li")
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.data("id");
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@@ -846,12 +836,11 @@ var FolderToolbarView = Backbone.View.extend({
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* @param {str} history_name name of the history to import to
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*/
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chainCallImportingIntoHistory: function(history_item_set, history_name) {
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var self = this;
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var popped_item = history_item_set.pop();
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if (typeof popped_item == "undefined") {
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if (this.options.chain_call_control.failed_number === 0) {
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mod_toastr.success("Selected datasets imported into history. Click this to start analyzing it.", "", {
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onclick: function() {
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onclick: () => {
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window.location = Galaxy.root;
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}
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});
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@@ -862,7 +851,7 @@ var FolderToolbarView = Backbone.View.extend({
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"Some of the datasets could not be imported into history. Click this to see what was imported.",
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"",
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{
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onclick: function() {
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onclick: () => {
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window.location = Galaxy.root;
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}
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}
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@@ -880,13 +869,13 @@ var FolderToolbarView = Backbone.View.extend({
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promise
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.done(() => {
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self.updateProgress();
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self.chainCallImportingIntoHistory(history_item_set, history_name);
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this.updateProgress();
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this.chainCallImportingIntoHistory(history_item_set, history_name);
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})
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.fail(() => {
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self.options.chain_call_control.failed_number += 1;
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self.updateProgress();
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self.chainCallImportingIntoHistory(history_item_set, history_name);
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this.options.chain_call_control.failed_number += 1;
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this.updateProgress();
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this.chainCallImportingIntoHistory(history_item_set, history_name);
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});
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},
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@@ -897,7 +886,6 @@ var FolderToolbarView = Backbone.View.extend({
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* @param {boolean} tag_using_filenames add tags to datasets using names of files
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*/
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chainCallImportingUserdirFiles: function(options) {
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var that = this;
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var popped_item = options.paths.pop();
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if (typeof popped_item === "undefined") {
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if (this.options.chain_call_control.failed_number === 0) {
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@@ -910,9 +898,9 @@ var FolderToolbarView = Backbone.View.extend({
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||||
}
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var promise = $.when(
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$.post(
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`${Galaxy.root}api/libraries/datasets?encoded_folder_id=${that.id}&source=${
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options.source
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||||
}&path=${popped_item}&file_type=${options.file_type}&link_data=${options.link_data}&space_to_tab=${
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`${Galaxy.root}api/libraries/datasets?encoded_folder_id=${this.id}&source=${options.source}&path=${
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||||
popped_item
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}&file_type=${options.file_type}&link_data=${options.link_data}&space_to_tab=${
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||||
options.space_to_tab
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||||
}&to_posix_lines=${options.to_posix_lines}&dbkey=${options.dbkey}&tag_using_filenames=${
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options.tag_using_filenames
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||||
@@ -921,13 +909,13 @@ var FolderToolbarView = Backbone.View.extend({
|
||||
);
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||||
promise
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||||
.done(response => {
|
||||
that.updateProgress();
|
||||
that.chainCallImportingUserdirFiles(options);
|
||||
this.updateProgress();
|
||||
this.chainCallImportingUserdirFiles(options);
|
||||
})
|
||||
.fail(() => {
|
||||
that.options.chain_call_control.failed_number += 1;
|
||||
that.updateProgress();
|
||||
that.chainCallImportingUserdirFiles(options);
|
||||
this.options.chain_call_control.failed_number += 1;
|
||||
this.updateProgress();
|
||||
this.chainCallImportingUserdirFiles(options);
|
||||
});
|
||||
},
|
||||
|
||||
@@ -945,7 +933,6 @@ var FolderToolbarView = Backbone.View.extend({
|
||||
*/
|
||||
chainCallImportingFolders: function(options) {
|
||||
// TODO need to check which paths to call
|
||||
var that = this;
|
||||
var popped_item = options.paths.pop();
|
||||
if (typeof popped_item == "undefined") {
|
||||
if (this.options.chain_call_control.failed_number === 0) {
|
||||
@@ -959,24 +946,24 @@ var FolderToolbarView = Backbone.View.extend({
|
||||
}
|
||||
var promise = $.when(
|
||||
$.post(
|
||||
`${Galaxy.root}api/libraries/datasets?encoded_folder_id=${that.id}&source=${
|
||||
options.source
|
||||
}&path=${popped_item}&preserve_dirs=${options.preserve_dirs}&link_data=${
|
||||
options.link_data
|
||||
}&to_posix_lines=${options.to_posix_lines}&space_to_tab=${options.space_to_tab}&file_type=${
|
||||
options.file_type
|
||||
}&dbkey=${options.dbkey}&tag_using_filenames=${options.tag_using_filenames}`
|
||||
`${Galaxy.root}api/libraries/datasets?encoded_folder_id=${this.id}&source=${options.source}&path=${
|
||||
popped_item
|
||||
}&preserve_dirs=${options.preserve_dirs}&link_data=${options.link_data}&to_posix_lines=${
|
||||
options.to_posix_lines
|
||||
}&space_to_tab=${options.space_to_tab}&file_type=${options.file_type}&dbkey=${
|
||||
options.dbkey
|
||||
}&tag_using_filenames=${options.tag_using_filenames}`
|
||||
)
|
||||
);
|
||||
promise
|
||||
.done(response => {
|
||||
that.updateProgress();
|
||||
that.chainCallImportingFolders(options);
|
||||
this.updateProgress();
|
||||
this.chainCallImportingFolders(options);
|
||||
})
|
||||
.fail(() => {
|
||||
that.options.chain_call_control.failed_number += 1;
|
||||
that.updateProgress();
|
||||
that.chainCallImportingFolders(options);
|
||||
this.options.chain_call_control.failed_number += 1;
|
||||
this.updateProgress();
|
||||
this.chainCallImportingFolders(options);
|
||||
});
|
||||
},
|
||||
|
||||
@@ -986,7 +973,6 @@ var FolderToolbarView = Backbone.View.extend({
|
||||
* @param {array} hdas_set array of empty hda objects
|
||||
*/
|
||||
chainCallAddingHdas: function(hdas_set) {
|
||||
var self = this;
|
||||
this.added_hdas = new mod_library_model.Folder();
|
||||
var popped_item = hdas_set.pop();
|
||||
if (typeof popped_item == "undefined") {
|
||||
@@ -1009,13 +995,13 @@ var FolderToolbarView = Backbone.View.extend({
|
||||
promise
|
||||
.done(model => {
|
||||
Galaxy.libraries.folderListView.collection.add(model);
|
||||
self.updateProgress();
|
||||
self.chainCallAddingHdas(hdas_set);
|
||||
this.updateProgress();
|
||||
this.chainCallAddingHdas(hdas_set);
|
||||
})
|
||||
.fail(() => {
|
||||
self.options.chain_call_control.failed_number += 1;
|
||||
self.updateProgress();
|
||||
self.chainCallAddingHdas(hdas_set);
|
||||
this.options.chain_call_control.failed_number += 1;
|
||||
this.updateProgress();
|
||||
this.chainCallAddingHdas(hdas_set);
|
||||
});
|
||||
},
|
||||
|
||||
@@ -1025,7 +1011,6 @@ var FolderToolbarView = Backbone.View.extend({
|
||||
* @param {array} lddas_set array of lddas to delete
|
||||
*/
|
||||
chainCallDeletingItems: function(items_to_delete) {
|
||||
var self = this;
|
||||
this.deleted_items = new mod_library_model.Folder();
|
||||
var item_to_delete = items_to_delete.pop();
|
||||
if (typeof item_to_delete === "undefined") {
|
||||
@@ -1047,7 +1032,7 @@ var FolderToolbarView = Backbone.View.extend({
|
||||
.destroy()
|
||||
.done(item => {
|
||||
Galaxy.libraries.folderListView.collection.remove(item_to_delete.id);
|
||||
self.updateProgress();
|
||||
this.updateProgress();
|
||||
// add the deleted item to collection, triggers rendering
|
||||
if (Galaxy.libraries.folderListView.options.include_deleted) {
|
||||
var updated_item = null;
|
||||
@@ -1061,12 +1046,12 @@ var FolderToolbarView = Backbone.View.extend({
|
||||
}
|
||||
Galaxy.libraries.folderListView.collection.add(updated_item);
|
||||
}
|
||||
self.chainCallDeletingItems(items_to_delete);
|
||||
this.chainCallDeletingItems(items_to_delete);
|
||||
})
|
||||
.fail(() => {
|
||||
self.options.chain_call_control.failed_number += 1;
|
||||
self.updateProgress();
|
||||
self.chainCallDeletingItems(items_to_delete);
|
||||
this.options.chain_call_control.failed_number += 1;
|
||||
this.updateProgress();
|
||||
this.chainCallDeletingItems(items_to_delete);
|
||||
});
|
||||
},
|
||||
|
||||
@@ -1102,7 +1087,7 @@ var FolderToolbarView = Backbone.View.extend({
|
||||
title: _l("Deleting selected items"),
|
||||
body: template({}),
|
||||
buttons: {
|
||||
Close: function() {
|
||||
Close: () => {
|
||||
Galaxy.modal.hide();
|
||||
}
|
||||
}
|
||||
@@ -1110,7 +1095,7 @@ var FolderToolbarView = Backbone.View.extend({
|
||||
// init the control counters
|
||||
this.options.chain_call_control.total_number = 0;
|
||||
this.options.chain_call_control.failed_number = 0;
|
||||
$checkedValues.each(function() {
|
||||
$checkedValues.each(() => {
|
||||
var row_id = $(this)
|
||||
.closest("tr")
|
||||
.data("id");
|
||||
@@ -1150,7 +1135,6 @@ var FolderToolbarView = Backbone.View.extend({
|
||||
|
||||
showLocInfo: function() {
|
||||
var library = null;
|
||||
var that = this;
|
||||
if (Galaxy.libraries.libraryListView !== null) {
|
||||
library = Galaxy.libraries.libraryListView.collection.get(this.options.parent_library_id);
|
||||
this.showLocInfoModal(library);
|
||||
@@ -1159,8 +1143,8 @@ var FolderToolbarView = Backbone.View.extend({
|
||||
id: this.options.parent_library_id
|
||||
});
|
||||
library.fetch({
|
||||
success: function() {
|
||||
that.showLocInfoModal(library);
|
||||
success: () => {
|
||||
this.showLocInfoModal(library);
|
||||
},
|
||||
error: function(model, response) {
|
||||
if (typeof response.responseJSON !== "undefined") {
|
||||
@@ -1174,15 +1158,14 @@ var FolderToolbarView = Backbone.View.extend({
|
||||
},
|
||||
|
||||
showLocInfoModal: function(library) {
|
||||
var that = this;
|
||||
var template = this.templateLocInfoInModal();
|
||||
this.modal = Galaxy.modal;
|
||||
this.modal.show({
|
||||
closing_events: true,
|
||||
title: _l("Location Details"),
|
||||
body: template({ library: library, options: that.options }),
|
||||
body: template({ library: library, options: this.options }),
|
||||
buttons: {
|
||||
Close: function() {
|
||||
Close: () => {
|
||||
Galaxy.modal.hide();
|
||||
}
|
||||
}
|
||||
|
||||
Reference in New Issue
Block a user