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Merge pull request #3204 from galaxyproject/release_16.10

Browse Source 
Merge release_16.10 into dev
This commit is contained in:
Martin Cech
2016-11-21 14:40:05 -05:00
committed by GitHub
parent 78b533d1b5 aadc14d967
commit d2c95b43fa
14 changed files with 48 additions and 45 deletions
Download Patch File Download Diff File Expand all files Collapse all files
client/galaxy/scripts/apps/analysis.js
-1
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@@ -31,7 +31,6 @@ window.app = function app( options, bootstrapped ){
toolPanel = new ToolPanel({
el : '#left',
userIsAnonymous : Galaxy.user.isAnonymous(),
search_url : config.search_url,
toolbox : config.toolbox,
toolbox_in_panel : config.toolbox_in_panel,
stored_workflow_menu_entries : config.stored_workflow_menu_entries,
client/galaxy/scripts/apps/tool-panel.js
+1 -2
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@@ -17,7 +17,6 @@ var ToolPanel = LeftPanel.extend({
// create tool search, tool panel, and tool panel view.
var tool_search = new Tools.ToolSearch({
search_url : options.search_url,
hidden : false
});
var tools = new Tools.ToolCollection( options.toolbox );
@@ -112,4 +111,4 @@ var ToolPanel = LeftPanel.extend({
toString : function(){ return 'ToolPanel'; }
});
module.exports = ToolPanel;
module.exports = ToolPanel;
client/galaxy/scripts/mvc/history/options-menu.js
+12 -4
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@@ -60,15 +60,23 @@ var menu = [
},
{
html : _l( 'Delete' ),
confirm : _l( 'Really delete the current history?' ),
href : 'history/delete_current',
anon : true,
func : function() {
if( Galaxy && Galaxy.currHistoryPanel && confirm( _l( 'Really delete the current history?' ) ) ){
galaxy_main.window.location.href = 'history/delete?id=' + Galaxy.currHistoryPanel.model.id;
}
},
},
{
html : _l( 'Delete Permanently' ),
confirm : _l( 'Really delete the current history permanently? This cannot be undone.' ),
href : 'history/delete_current?purge=True',
purge : true,
anon : true,
func : function() {
if( Galaxy && Galaxy.currHistoryPanel
&& confirm( _l( 'Really delete the current history permanently? This cannot be undone.' ) ) ){
galaxy_main.window.location.href = 'history/delete?purge=True&id=' + Galaxy.currHistoryPanel.model.id;
}
},
},
client/galaxy/scripts/mvc/tool/tools.js
-1
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@@ -351,7 +351,6 @@ var ToolSearch = Backbone.Model.extend({
search_hint_string: "search tools",
min_chars_for_search: 3,
clear_btn_url: "",
search_url: "",
visible: true,
query: "",
results: null,
lib/galaxy/webapps/galaxy/controllers/root.py
-1
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@@ -53,7 +53,6 @@ class RootController( controller.JSAppLauncher, UsesAnnotations ):
'active_view' : 'analysis',
'params' : dict( trans.request.params ),
'enable_cloud_launch' : app.config.get_bool( 'enable_cloud_launch', False ),
'search_url' : web.url_for( controller='root', action='tool_search' ),
# TODO: next two should be redundant - why can't we build one from the other?
'toolbox' : app.toolbox.to_dict( trans, in_panel=False ),
'toolbox_in_panel' : app.toolbox.to_dict( trans ),
static/maps/mvc/history/options-menu.js.map
+1 -1
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@@ -1 +1 @@
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static/maps/mvc/tool/tools.js.map
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static/scripts/bundled/analysis.bundled.js
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static/scripts/bundled/analysis.bundled.js.map
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static/scripts/bundled/libs.bundled.js
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static/scripts/bundled/libs.bundled.js.map
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static/scripts/bundled/login.bundled.js.map
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static/scripts/mvc/history/options-menu.js
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@@ -1,2 +1,2 @@
define(["mvc/ui/popup-menu","mvc/history/copy-dialog","mvc/base-mvc","utils/localization","mvc/webhooks"],function(a,b,c,d,e){"use strict";function f(a,b,c){return _.clone(g).filter(function(d){return a&&!d.anon?!1:!b&&d.purge?!1:(d.href&&(d.href=c+d.href,d.target="galaxy_main"),d.confirm&&(d.func=function(){confirm(d.confirm)&&(galaxy_main.location=d.href)}),!0)})}var g=[{html:d("History Lists"),header:!0},{html:d("Saved Histories"),href:"history/list"},{html:d("Histories Shared with Me"),href:"history/list_shared"},{html:d("History Actions"),header:!0,anon:!0},{html:d("Create New"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.createNewHistory()}},{html:d("Copy History"),func:function(){b(Galaxy.currHistoryPanel.model).done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:d("Share or Publish"),href:"history/sharing"},{html:d("Show Structure"),href:"history/display_structured",anon:!0},{html:d("Extract Workflow"),href:"workflow/build_from_current_history"},{html:d("Delete"),confirm:d("Really delete the current history?"),href:"history/delete_current"},{html:d("Delete Permanently"),confirm:d("Really delete the current history permanently? This cannot be undone."),href:"history/delete_current?purge=True",purge:!0,anon:!0},{html:d("Dataset Actions"),header:!0,anon:!0},{html:d("Copy Datasets"),href:"dataset/copy_datasets"},{html:d("Dataset Security"),href:"root/history_set_default_permissions"},{html:d("Resume Paused Jobs"),href:"history/resume_paused_jobs?current=True",anon:!0},{html:d("Collapse Expanded Datasets"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.collapseAll()}},{html:d("Unhide Hidden Datasets"),anon:!0,func:function(){if(Galaxy&&Galaxy.currHistoryPanel&&confirm(d("Really unhide all hidden datasets?"))){var a=Galaxy.currHistoryPanel.model.contents.hidden();a.ajaxQueue(Backbone.Model.prototype.save,{visible:!0}).done(function(){Galaxy.currHistoryPanel.renderItems()}).fail(function(){alert("There was an error unhiding the datasets"),console.error(arguments)})}}},{html:d("Delete Hidden Datasets"),anon:!0,func:function(){if(Galaxy&&Galaxy.currHistoryPanel&&confirm(d("Really delete all hidden datasets?"))){var a=Galaxy.currHistoryPanel.model.contents.hidden();a.ajaxQueue(Backbone.Model.prototype.save,{deleted:!0,visible:!0}).done(function(){Galaxy.currHistoryPanel.renderItems()}).fail(function(){alert("There was an error deleting the datasets"),console.error(arguments)})}}},{html:d("Purge Deleted Datasets"),confirm:d("Really delete all deleted datasets permanently? This cannot be undone."),href:"history/purge_deleted_datasets",purge:!0,anon:!0},{html:d("Downloads"),header:!0},{html:d("Export Tool Citations"),href:"history/citations",anon:!0},{html:d("Export History to File"),href:"history/export_archive?preview=True",anon:!0},{html:d("Other Actions"),header:!0},{html:d("Import from File"),href:"history/import_archive"}];e.add({url:"api/webhooks/history-menu/all",async:!1,callback:function(a){var b=[];$.each(a.models,function(a,c){var e=c.toJSON();e.activate&&b.push({html:d(e.config.title),anon:!0})}),b.length>0&&(b.unshift({html:d("Webhooks"),header:!0}),$.merge(g,b))}});var h=function(b,c){c=c||{};var d=void 0===c.anonymous?!0:c.anonymous,e=c.purgeAllowed||!1,g=f(d,e,Galaxy.root);return new a(b,g)};return h});
define(["mvc/ui/popup-menu","mvc/history/copy-dialog","mvc/base-mvc","utils/localization","mvc/webhooks"],function(a,b,c,d,e){"use strict";function f(a,b,c){return _.clone(g).filter(function(d){return a&&!d.anon?!1:!b&&d.purge?!1:(d.href&&(d.href=c+d.href,d.target="galaxy_main"),d.confirm&&(d.func=function(){confirm(d.confirm)&&(galaxy_main.location=d.href)}),!0)})}var g=[{html:d("History Lists"),header:!0},{html:d("Saved Histories"),href:"history/list"},{html:d("Histories Shared with Me"),href:"history/list_shared"},{html:d("History Actions"),header:!0,anon:!0},{html:d("Create New"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.createNewHistory()}},{html:d("Copy History"),func:function(){b(Galaxy.currHistoryPanel.model).done(function(){Galaxy.currHistoryPanel.loadCurrentHistory()})}},{html:d("Share or Publish"),href:"history/sharing"},{html:d("Show Structure"),href:"history/display_structured",anon:!0},{html:d("Extract Workflow"),href:"workflow/build_from_current_history"},{html:d("Delete"),anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm(d("Really delete the current history?"))&&(galaxy_main.window.location.href="history/delete?id="+Galaxy.currHistoryPanel.model.id)}},{html:d("Delete Permanently"),purge:!0,anon:!0,func:function(){Galaxy&&Galaxy.currHistoryPanel&&confirm(d("Really delete the current history permanently? This cannot be undone."))&&(galaxy_main.window.location.href="history/delete?purge=True&id="+Galaxy.currHistoryPanel.model.id)}},{html:d("Dataset Actions"),header:!0,anon:!0},{html:d("Copy Datasets"),href:"dataset/copy_datasets"},{html:d("Dataset Security"),href:"root/history_set_default_permissions"},{html:d("Resume Paused Jobs"),href:"history/resume_paused_jobs?current=True",anon:!0},{html:d("Collapse Expanded Datasets"),func:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.collapseAll()}},{html:d("Unhide Hidden Datasets"),anon:!0,func:function(){if(Galaxy&&Galaxy.currHistoryPanel&&confirm(d("Really unhide all hidden datasets?"))){var a=Galaxy.currHistoryPanel.model.contents.hidden();a.ajaxQueue(Backbone.Model.prototype.save,{visible:!0}).done(function(){Galaxy.currHistoryPanel.renderItems()}).fail(function(){alert("There was an error unhiding the datasets"),console.error(arguments)})}}},{html:d("Delete Hidden Datasets"),anon:!0,func:function(){if(Galaxy&&Galaxy.currHistoryPanel&&confirm(d("Really delete all hidden datasets?"))){var a=Galaxy.currHistoryPanel.model.contents.hidden();a.ajaxQueue(Backbone.Model.prototype.save,{deleted:!0,visible:!0}).done(function(){Galaxy.currHistoryPanel.renderItems()}).fail(function(){alert("There was an error deleting the datasets"),console.error(arguments)})}}},{html:d("Purge Deleted Datasets"),confirm:d("Really delete all deleted datasets permanently? This cannot be undone."),href:"history/purge_deleted_datasets",purge:!0,anon:!0},{html:d("Downloads"),header:!0},{html:d("Export Tool Citations"),href:"history/citations",anon:!0},{html:d("Export History to File"),href:"history/export_archive?preview=True",anon:!0},{html:d("Other Actions"),header:!0},{html:d("Import from File"),href:"history/import_archive"}];e.add({url:"api/webhooks/history-menu/all",async:!1,callback:function(a){var b=[];$.each(a.models,function(a,c){var e=c.toJSON();e.activate&&b.push({html:d(e.config.title),anon:!0})}),b.length>0&&(b.unshift({html:d("Webhooks"),header:!0}),$.merge(g,b))}});var h=function(b,c){c=c||{};var d=void 0===c.anonymous?!0:c.anonymous,e=c.purgeAllowed||!1,g=f(d,e,Galaxy.root);return new a(b,g)};return h});
//# sourceMappingURL=../../../maps/mvc/history/options-menu.js.map
static/scripts/mvc/tool/tools.js
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