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Enable splitting BLAST jobs up (doesn't work yet)

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Peter Cock
2012-02-16 12:14:54 +00:00
parent acb44176bc
commit d2832a877a
5 changed files with 5 additions and 0 deletions
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tools/ncbi_blast_plus/ncbi_blastn_wrapper.xml
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@@ -1,5 +1,6 @@
<tool id="ncbi_blastn_wrapper" name="NCBI BLAST+ blastn" version="0.0.11">
<description>Search nucleotide database with nucleotide query sequence(s)</description>
<parallelism method="multi" split_inputs="query" shared_inputs="subject" merge_outputs="output1"></parallelism>
<version_command>blastn -version</version_command>
<command interpreter="python">hide_stderr.py
## The command is a Cheetah template which allows some Python based syntax.
tools/ncbi_blast_plus/ncbi_blastp_wrapper.xml
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@@ -1,5 +1,6 @@
<tool id="ncbi_blastp_wrapper" name="NCBI BLAST+ blastp" version="0.0.11">
<description>Search protein database with protein query sequence(s)</description>
<parallelism method="multi" split_inputs="query" shared_inputs="subject" merge_outputs="output1"></parallelism>
<version_command>blastp -version</version_command>
<command interpreter="python">hide_stderr.py
## The command is a Cheetah template which allows some Python based syntax.
tools/ncbi_blast_plus/ncbi_blastx_wrapper.xml
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@@ -1,5 +1,6 @@
<tool id="ncbi_blastx_wrapper" name="NCBI BLAST+ blastx" version="0.0.11">
<description>Search protein database with translated nucleotide query sequence(s)</description>
<parallelism method="multi" split_inputs="query" shared_inputs="subject" merge_outputs="output1"></parallelism>
<version_command>blastx -version</version_command>
<command interpreter="python">hide_stderr.py
## The command is a Cheetah template which allows some Python based syntax.
tools/ncbi_blast_plus/ncbi_tblastn_wrapper.xml
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@@ -1,5 +1,6 @@
<tool id="ncbi_tblastn_wrapper" name="NCBI BLAST+ tblastn" version="0.0.11">
<description>Search translated nucleotide database with protein query sequence(s)</description>
<parallelism method="multi" split_inputs="query" shared_inputs="subject" merge_outputs="output1"></parallelism>
<version_command>tblastn -version</version_command>
<command interpreter="python">hide_stderr.py
## The command is a Cheetah template which allows some Python based syntax.
tools/ncbi_blast_plus/ncbi_tblastx_wrapper.xml
+1
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@@ -1,5 +1,6 @@
<tool id="ncbi_tblastx_wrapper" name="NCBI BLAST+ tblastx" version="0.0.11">
<description>Search translated nucleotide database with translated nucleotide query sequence(s)</description>
<parallelism method="multi" split_inputs="query" shared_inputs="subject" merge_outputs="output1"></parallelism>
<version_command>tblastx -version</version_command>
<command interpreter="python">hide_stderr.py
## The command is a Cheetah template which allows some Python based syntax.