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WebLogo3 wrapper repair to a string format edge case. Reports are good for finding these - user hadn't reported...

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This commit is contained in:
Ross Lazarus
2011-08-20 14:27:30 +10:00
parent b58f2a36b4
commit d178424fc9
1 changed files with 5 additions and 5 deletions
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tools/rgenetics/rgWebLogo3.py
+5 -5
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@@ -43,11 +43,6 @@ class WL3:
tlf = open(templog,'w')
process = subprocess.Popen(cl, shell=True, stderr=tlf, stdout=tlf)
rval = process.wait()
if rval <> 0:
print >> sys.stderr, '## rgWebLogo3.py error - executing %s returned error code %d' % cl
print >> sys.stderr, '## This may be a data problem or a tool dependency (%s) installation problem' % WEBLOGO
print >> sys.stderr, '## Please ensure %s is correctly installed and working on the command line -see http://code.google.com/p/weblogo' % WEBLOGO
sys.exit(1)
tlf.close()
tlogs = ''.join(open(templog,'r').readlines())
if len(tlogs) > 1:
@@ -55,6 +50,11 @@ class WL3:
else:
s = '## executing %s returned status %d. Nothing appeared on stderr/stdout\n' % (cl,rval)
os.unlink(templog) # always
if rval <> 0:
print >> sys.stderr, '## rgWebLogo3.py error - executing %s returned error code %d' % (cl,rval)
print >> sys.stderr, '## This may be a data problem or a tool dependency (%s) installation problem' % WEBLOGO
print >> sys.stderr, '## Please ensure %s is correctly installed and working on the command line -see http://code.google.com/p/weblogo' % WEBLOGO
sys.exit(1)
return s