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Fix for GMAJ tool when species chromosomes are not specified. Error appears in paster.log as 'TypeError: iterable argument required'

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Daniel Blankenberg
2008-09-03 12:06:33 -04:00
parent acb14a2b1b
commit d112668c6a
1 changed files with 1 additions and 1 deletions
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tools/visualization/GMAJ.xml
+1 -1
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@@ -82,7 +82,7 @@ nowarn = $nowarn
#set $seq_count = 0
#for $spec_count, $annotation in $enumerate( $annotations ):
#if $annotation['species'].value in $maf_input.metadata.species_chromosomes and $maf_input.metadata.species_chromosomes[$annotation['species'].value]:
#if $maf_input.metadata.species_chromosomes and $annotation['species'].value in $maf_input.metadata.species_chromosomes and $maf_input.metadata.species_chromosomes[$annotation['species'].value]:
#set $seq_names = [ "%s.%s" % ( $annotation['species'].value, $chrom ) for $chrom in $maf_input.metadata.species_chromosomes[$annotation['species'].value]]
#else
#set $seq_names = [$annotation['species'].value]