Initial work toward separate galaxy-lib, galaxy-app, galaxy, and

tool-shed packages (see #1396). Lots of path fixing to be done still.

setup.py

@@ -1,3 +1,4 @@
+import os
 import sys
 
 from setuptools import setup, find_packages
@@ -11,6 +12,91 @@ readme = open('README.rst').read()
 requirements = [
 ]
 
+GALAXY_PACKAGE = os.environ.get("GALAXY_PACKAGE", "galaxy-lib")
+
+def _find_packages(base):
+    r = []
+    for sub in find_packages(os.sep.join(['lib'] + base.split('.'))):
+        print 'Found package', '.'.join([base, sub])
+        r.append('.'.join([base, sub]))
+    return r
+
+
+if GALAXY_PACKAGE == "galaxy-lib":
+    requirements = []
+    base_packages = [
+        'galaxy.datatypes',
+        'galaxy.exceptions',
+        'galaxy.jobs.metrics',
+        'galaxy.objectstore',
+        'galaxy.tools',
+        'galaxy.util',
+    ]
+    package_data = [
+        'exceptions/error_codes.json',
+        'datatypes/converters/*.xml',
+        'datatypes/set_metadata_tool.xml',
+        'tools/imp_exp/imp_history_from_archive.xml',
+        'tools/imp_exp/exp_history_to_archive.xml',
+    ]
+elif GALAXY_PACKAGE == "galaxy-app":
+    requirements = [
+        'galaxy-lib',
+    ]
+    base_packages = [
+        'galaxy.auth',
+        'galaxy.dependencies',
+        'galaxy.external_services',
+        'galaxy.jobs',
+        'galaxy.model',
+        'galaxy.quota',
+        'galaxy.security',
+        'galaxy.work',
+    ]
+    package_data = [
+        'jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh',
+        'jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh',
+        'model/migrate/migrate.cfg',
+        'dependencies/*.txt',
+        # FIXME: web/proxy/js/lib doesn't exist
+        #'web/proxy/js/*',
+    ]
+elif GALAXY_PACKAGE == "galaxy":
+    requirements = [
+        'galaxy-app',
+    ]
+    base_packages = [
+        'galaxy.actions',
+        'galaxy.dataset_collections',
+        'galaxy.forms',
+        'galaxy.managers',
+        'galaxy.openid',
+        'galaxy.sample_tracking',
+        'galaxy.tags',
+        'galaxy.tours',
+        'galaxy.visualization',
+        'galaxy.web',
+        'galaxy.webapps',
+        'galaxy.workflow',
+    ]
+    package_data = []
+elif GALAXY_PACKAGE == 'tool-shed':
+    requirements = [
+        'galaxy-app',
+    ]
+    packages = ['tool_shed'] + _find_packages('tool_shed')
+    package_data = []
+else:
+    sys.stderr.write('ERROR: Unknown package name: {}\n'.format(GALAXY_PACKAGE))
+    sys.exit(1)
+
+
+if GALAXY_PACKAGE.startswith('galaxy'):
+    packages = ['galaxy']
+    for base_package in base_packages:
+        packages.append(base_package)
+        packages.extend(_find_packages(base_package))
+
 
 # sets VERSION (also VERSION_MAJOR and VERSION_MINOR)
 execfile('lib/galaxy/version.py')
@@ -18,38 +104,31 @@ execfile('lib/galaxy/version.py')
 scripts = ["scripts/galaxy"]
 
 setup(
-    name='galaxy',
+    #name='galaxy',
+    name=GALAXY_PACKAGE,
     version=VERSION,
     description='Galaxy (http://galaxyproject.org/).',
     long_description=readme,
     author='Galaxy Project',
     author_email='galaxy-dev@lists.galaxyproject.org',
     url='https://github.com/galaxyproject/galaxy',
-    packages=find_packages('lib'),
+    #packages=find_packages('lib'),
+    packages=packages,
     entry_points='''
         [console_scripts]
         galaxy-paster=galaxy.util.pastescript.serve:run
         galaxy-main=galaxy.main:main
     ''',
     scripts=scripts,
-    package_data={'galaxy': [
-        'exceptions/error_codes.json',
-        'jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh',
-        'jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh',
-        'model/migrate/migrate.cfg',
-        'dependencies/*.txt',
-        'datatypes/converters/*.xml',
-        'datatypes/set_metadata_tool.xml',
-        'tools/imp_exp/imp_history_from_archive.xml',
-        'tools/imp_exp/exp_history_to_archive.xml',
-        # FIXME: web/proxy/js/lib doesn't exist
-        #'web/proxy/js/*',
-    ], 'tool_shed': [
-        'galaxy_install/migrate/migrate.cfg',
-        'scripts/bootstrap_tool_shed/parse_run_sh_args.sh',
-        'scripts/bootstrap_tool_shed/bootstrap_tool_shed.sh',
-        'scripts/bootstrap_tool_shed/user_info.xml',
-    ]},
+    package_data={
+        'galaxy': package_data,
+        'tool_shed': [
+            'galaxy_install/migrate/migrate.cfg',
+            'scripts/bootstrap_tool_shed/parse_run_sh_args.sh',
+            'scripts/bootstrap_tool_shed/bootstrap_tool_shed.sh',
+            'scripts/bootstrap_tool_shed/user_info.xml',
+        ],
+    },
     package_dir={'': 'lib'},
     include_package_data=True,
     install_requires=requirements,