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DatasetInstance -> DatasetProtocol in larch.py typehints

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This commit is contained in:
Patrick Austin
2023-11-24 13:23:15 +00:00
parent 42a22199cf
commit cfab9e8169
1 changed files with 6 additions and 8 deletions
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lib/galaxy/datatypes/larch.py
+6 -8
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@@ -1,19 +1,17 @@
from typing import List, TYPE_CHECKING
from typing import List
from galaxy.datatypes.data import (
get_file_peek,
Text,
)
from galaxy.datatypes.metadata import MetadataElement
from galaxy.datatypes.protocols import DatasetProtocol
from galaxy.datatypes.sniff import (
build_sniff_from_prefix,
FilePrefix,
get_headers,
)
if TYPE_CHECKING:
from galaxy.model import DatasetInstance
@build_sniff_from_prefix
class AthenaProject(Text):
@@ -78,7 +76,7 @@ class AthenaProject(Text):
return file_prefix.startswith("# Athena project file")
def set_meta(self, dataset: "DatasetInstance", overwrite: bool = True, **kwd) -> None:
def set_meta(self, dataset: DatasetProtocol, *, overwrite: bool = True, **kwd) -> None:
"""
Extract metadata from @args
"""
@@ -104,7 +102,7 @@ class AthenaProject(Text):
extract_arg(args, "xmax")
extract_arg(args, "xmin")
def set_peek(self, dataset: "DatasetInstance", **kwd) -> None:
def set_peek(self, dataset: DatasetProtocol, **kwd) -> None:
if not dataset.dataset.purged:
dataset.peek = get_file_peek(dataset.file_name)
dataset.info = (
@@ -198,7 +196,7 @@ class FEFFInput(Text):
return False
def set_meta(self, dataset: "DatasetInstance", overwrite: bool = True, **kwd) -> None:
def set_meta(self, dataset: DatasetProtocol, overwrite: bool = True, **kwd) -> None:
"""
Extract metadata from TITLE
"""
@@ -210,7 +208,7 @@ class FEFFInput(Text):
dataset.metadata.title_block = title_block
def set_peek(self, dataset: "DatasetInstance", **kwd) -> None:
def set_peek(self, dataset: DatasetProtocol, **kwd) -> None:
if not dataset.dataset.purged:
dataset.peek = get_file_peek(dataset.file_name)
dataset.info = dataset.metadata.title_block