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Fix linting, update schema

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This commit is contained in:
guerler
2023-11-15 17:37:42 +03:00
parent 91e443f2f1
commit cea2c95720
4 changed files with 18 additions and 118 deletions
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client/src/api/schema/schema.ts
+17 -115
View File
@@ -1508,10 +1508,6 @@ export interface paths {
/** Returns visualizations for the current user. */
get: operations["index_api_visualizations_get"];
};
"/api/visualizations/detailed": {
/** Returns visualizations for the current user with detailed resolution. */
get: operations["index_detailed_api_visualizations_detailed_get"];
};
"/api/visualizations/{id}/disable_link_access": {
/**
* Makes this item inaccessible by a URL link.
@@ -9455,10 +9451,10 @@ export interface components {
*/
Visualization: Record<string, never>;
/**
* VisualizationDetails
* VisualizationSummary
* @description Base model definition with common configuration used by all derived models.
*/
VisualizationDetails: {
VisualizationSummary: {
/**
* Create Time
* Format: date-time
@@ -9470,13 +9466,27 @@ export interface components {
* @description The database key of the visualization.
*/
dbkey?: string;
/**
* Deleted
* @description Whether this Visualization has been deleted.
*/
deleted: boolean;
/**
* ID
* @description Encoded ID of the Visualization.
* @example 0123456789ABCDEF
*/
id: string;
sharing_status?: components["schemas"]["SharingStatus"];
/**
* Importable
* @description Whether this Visualization can be imported.
*/
importable: boolean;
/**
* Published
* @description Whether this Visualization has been published.
*/
published: boolean;
/**
* Tags
* @description A list of tags to add to this item.
@@ -9499,39 +9509,6 @@ export interface components {
*/
update_time?: string;
};
/**
* VisualizationDetailsList
* @description Base model definition with common configuration used by all derived models.
* @default []
*/
VisualizationDetailsList: components["schemas"]["VisualizationDetails"][];
/**
* VisualizationSummary
* @description Base model definition with common configuration used by all derived models.
*/
VisualizationSummary: {
/**
* DbKey
* @description The database key of the visualization.
*/
dbkey?: string;
/**
* ID
* @description Encoded ID of the Visualization.
* @example 0123456789ABCDEF
*/
id: string;
/**
* Title
* @description The name of the visualization.
*/
title: string;
/**
* Type
* @description The type of the visualization.
*/
type: string;
};
/**
* VisualizationSummaryList
* @description Base model definition with common configuration used by all derived models.
@@ -18025,81 +18002,6 @@ export interface operations {
};
};
};
index_detailed_api_visualizations_detailed_get: {
/** Returns visualizations for the current user with detailed resolution. */
parameters?: {
/** @description Whether to include deleted pages in the result. */
/** @description The maximum number of items to return. */
/** @description Starts at the beginning skip the first ( offset - 1 ) items and begin returning at the Nth item */
/** @description Sort page index by this specified attribute on the page model */
/** @description Sort in descending order? */
/**
* @description A mix of free text and GitHub-style tags used to filter the index operation.
*
* ## Query Structure
*
* GitHub-style filter tags (not be confused with Galaxy tags) are tags of the form
* `<tag_name>:<text_no_spaces>` or `<tag_name>:'<text with potential spaces>'`. The tag name
* *generally* (but not exclusively) corresponds to the name of an attribute on the model
* being indexed (i.e. a column in the database).
*
* If the tag is quoted, the attribute will be filtered exactly. If the tag is unquoted,
* generally a partial match will be used to filter the query (i.e. in terms of the implementation
* this means the database operation `ILIKE` will typically be used).
*
* Once the tagged filters are extracted from the search query, the remaining text is just
* used to search various documented attributes of the object.
*
* ## GitHub-style Tags Available
*
* `title`
* : The page's title.
*
* `slug`
* : The page's slug. (The tag `s` can be used a short hand alias for this tag to filter on this attribute.)
*
* `tag`
* : The page's tags. (The tag `t` can be used a short hand alias for this tag to filter on this attribute.)
*
* `user`
* : The page's owner's username. (The tag `u` can be used a short hand alias for this tag to filter on this attribute.)
*
* ## Free Text
*
* Free text search terms will be searched against the following attributes of the
* Visualizations: `title`, `slug`, `tag`, `type`.
*/
query?: {
deleted?: boolean;
limit?: number;
offset?: number;
user_id?: string;
show_published?: boolean;
show_shared?: boolean;
sort_by?: "create_time" | "title" | "update_time" | "username";
sort_desc?: boolean;
search?: string;
};
/** @description The user ID that will be used to effectively make this API call. Only admins and designated users can make API calls on behalf of other users. */
header?: {
"run-as"?: string;
};
};
responses: {
/** @description Successful Response */
200: {
content: {
"application/json": components["schemas"]["VisualizationDetailsList"];
};
};
/** @description Validation Error */
422: {
content: {
"application/json": components["schemas"]["HTTPValidationError"];
};
};
};
};
disable_link_access_api_visualizations__id__disable_link_access_put: {
/**
* Makes this item inaccessible by a URL link.
lib/galaxy/managers/visualizations.py
-1
View File
@@ -13,7 +13,6 @@ from typing import (
from sqlalchemy import (
false,
or_,
true,
)
from sqlalchemy.orm import aliased
lib/galaxy/schema/visualization.py
-1
View File
@@ -14,7 +14,6 @@ from galaxy.schema.fields import DecodedDatabaseIdField
from galaxy.schema.schema import (
CreateTimeField,
Model,
SharingStatus,
TagCollection,
UpdateTimeField,
)
lib/galaxy/webapps/galaxy/services/visualizations.py
+1 -1
View File
@@ -48,7 +48,7 @@ class VisualizationsService(ServiceBase):
"""Return a list of Visualizations viewable by the user
:rtype: list
:returns: dictionaries containing summary or detailed Visualization information
:returns: dictionaries containing Visualization details
"""
if not trans.user_is_admin:
user_id = trans.user and trans.user.id