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Bump bx-python to 0.8.8

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mvdbeek
2020-02-13 16:04:24 +01:00
parent 003108f927
commit cd7a2c3418
9 changed files with 9 additions and 9 deletions
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lib/galaxy/datatypes/converters/bed_to_interval_index_converter.xml
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@@ -1,7 +1,7 @@
<tool id="CONVERTER_bed_to_interval_index_0" name="Convert BED to Interval Index" version="1.0.0" hidden="true" profile="16.04">
<!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
<requirements>
<requirement type="package" version="0.8.7">bx-python</requirement>
<requirement type="package" version="0.8.8">bx-python</requirement>
</requirements>
<command>python '$__tool_directory__/interval_to_interval_index_converter.py' '$input1' '$output1'</command>
<inputs>
lib/galaxy/datatypes/converters/interval_to_bed12_converter.xml
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@@ -1,7 +1,7 @@
<tool id="CONVERTER_interval_to_bed12_0" name="Convert Genomic Intervals To Strict BED12" version="1.0.0" profile="16.04">
<!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
<requirements>
<requirement type="package" version="0.8.7">bx-python</requirement>
<requirement type="package" version="0.8.8">bx-python</requirement>
</requirements>
<command>
python '$__tool_directory__/interval_to_bedstrict_converter.py'
lib/galaxy/datatypes/converters/interval_to_bed6_converter.xml
+1 -1
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@@ -1,7 +1,7 @@
<tool id="CONVERTER_interval_to_bed6_0" name="Convert Genomic Intervals To Strict BED6" version="1.0.1" profile="16.04">
<!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
<requirements>
<requirement type="package" version="0.8.7">bx-python</requirement>
<requirement type="package" version="0.8.8">bx-python</requirement>
</requirements>
<command>python '$__tool_directory__/interval_to_bedstrict_converter.py' '$output1' '$input1' ${input1.metadata.chromCol} ${input1.metadata.startCol} ${input1.metadata.endCol} ${input1.metadata.strandCol} ${input1.metadata.nameCol} ${input1.extension} 6</command>
<inputs>
lib/galaxy/datatypes/converters/interval_to_bed_converter.xml
+1 -1
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@@ -1,7 +1,7 @@
<tool id="CONVERTER_interval_to_bed_0" name="Convert Genomic Intervals To BED" version="1.0.0" profile="16.04">
<!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
<requirements>
<requirement type="package" version="0.8.7">bx-python</requirement>
<requirement type="package" version="0.8.8">bx-python</requirement>
</requirements>
<command>python '$__tool_directory__/interval_to_bed_converter.py' '$output1' '$input1' ${input1.metadata.chromCol} ${input1.metadata.startCol} ${input1.metadata.endCol} ${input1.metadata.strandCol} ${input1.metadata.nameCol}</command>
<inputs>
lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.xml
+1 -1
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@@ -1,7 +1,7 @@
<tool id="CONVERTER_interval_to_bedstrict_0" name="Convert Genomic Intervals To Strict BED" version="1.0.1" profile="16.04">
<!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
<requirements>
<requirement type="package" version="0.8.7">bx-python</requirement>
<requirement type="package" version="0.8.8">bx-python</requirement>
</requirements>
<command>python '$__tool_directory__/interval_to_bedstrict_converter.py' '$output1' '$input1' ${input1.metadata.chromCol} ${input1.metadata.startCol} ${input1.metadata.endCol} ${input1.metadata.strandCol} ${input1.metadata.nameCol} ${input1.extension}</command>
<inputs>
lib/galaxy/datatypes/converters/interval_to_interval_index_converter.xml
+1 -1
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@@ -1,7 +1,7 @@
<tool id="CONVERTER_interval_to_interval_index_0" name="Convert Interval to Interval Index" version="1.0.1" hidden="true" profile="16.04">
<!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
<requirements>
<requirement type="package" version="0.8.7">bx-python</requirement>
<requirement type="package" version="0.8.8">bx-python</requirement>
</requirements>
<command>
python '$__tool_directory__/interval_to_interval_index_converter.py'
lib/galaxy/datatypes/converters/pileup_to_interval_index_converter.xml
+1 -1
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@@ -1,7 +1,7 @@
<tool id="CONVERTER_pileup_to_interval_index_0" name="Convert Pileup to Interval Index" version="1.0.1" hidden="true" profile="16.04">
<!-- <description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description> -->
<requirements>
<requirement type="package" version="0.8.7">bx-python</requirement>
<requirement type="package" version="0.8.8">bx-python</requirement>
</requirements>
<command>
python '$__tool_directory__/pileup_to_interval_index_converter.py'
lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.xml
+1 -1
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@@ -1,7 +1,7 @@
<tool id="CONVERTER_vcf_to_interval_index_0" name="Convert VCF to Interval Index" version="1.0.1" hidden="true" profile="16.04">
<description>__NOT_USED_CURRENTLY_FOR_CONVERTERS__</description>
<requirements>
<requirement type="package" version="0.8.7">bx-python</requirement>
<requirement type="package" version="0.8.8">bx-python</requirement>
<requirement type="package" version="1.1.4">galaxy_sequence_utils</requirement>
</requirements>
<command>python '$__tool_directory__/vcf_to_interval_index_converter.py' '$input1' '$output1'</command>
lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
+1 -1
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@@ -28,7 +28,7 @@ boltons==19.3.0
boto3==1.9.114
boto==2.49.0
botocore==1.12.253
bx-python==0.8.7
bx-python==0.8.8
bz2file==0.98 ; python_version < '3.3'
cachecontrol==0.11.7
cachetools==3.1.1