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Create version 23.2.1

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John Davis
2024-02-21 19:30:11 -05:00
parent ea9e2fb2f2
commit cb06b048b9
43 changed files with 589 additions and 100 deletions
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lib/galaxy/version.py
+1 -1
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@@ -1,3 +1,3 @@
VERSION_MAJOR = "23.2"
VERSION_MINOR = "1.dev0"
VERSION_MINOR = "1"
VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "")
packages/app/HISTORY.rst
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@@ -3,11 +3,129 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
=========
Bug fixes
=========
* pin fs.dropboxfs to >=1 by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16451 <https://github.com/galaxyproject/galaxy/pull/16451>`_
* Remove unnecessary check: item cannot be None by `@jdavcs <https://github.com/jdavcs>`_ in `#16550 <https://github.com/galaxyproject/galaxy/pull/16550>`_
* Fix: serialize `tool_shed_urls` directly from the API by `@davelopez <https://github.com/davelopez>`_ in `#16561 <https://github.com/galaxyproject/galaxy/pull/16561>`_
* Fix dependency update GitHub workflow by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16639 <https://github.com/galaxyproject/galaxy/pull/16639>`_
* Ensure Job belongs to current SA session by `@jdavcs <https://github.com/jdavcs>`_ in `#16647 <https://github.com/galaxyproject/galaxy/pull/16647>`_
* Account for shared usage between TS and galaxy apps by `@jdavcs <https://github.com/jdavcs>`_ in `#16746 <https://github.com/galaxyproject/galaxy/pull/16746>`_
* move the email and username redacting from the role loop by `@martenson <https://github.com/martenson>`_ in `#16805 <https://github.com/galaxyproject/galaxy/pull/16805>`_
* Fix shed unit test by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16811 <https://github.com/galaxyproject/galaxy/pull/16811>`_
* chore: fix typos by `@afuetterer <https://github.com/afuetterer>`_ in `#16851 <https://github.com/galaxyproject/galaxy/pull/16851>`_
* Fix bug in SQLAlchemy statement by `@jdavcs <https://github.com/jdavcs>`_ in `#16881 <https://github.com/galaxyproject/galaxy/pull/16881>`_
* Ruff and flake8 fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16884 <https://github.com/galaxyproject/galaxy/pull/16884>`_
* Update help in relabel_from_file.xml by `@lldelisle <https://github.com/lldelisle>`_ in `#16891 <https://github.com/galaxyproject/galaxy/pull/16891>`_
* Fix subtle bug in listify function + simplify list munging by `@jdavcs <https://github.com/jdavcs>`_ in `#16904 <https://github.com/galaxyproject/galaxy/pull/16904>`_
* prep for updated h5py and typos by `@mr-c <https://github.com/mr-c>`_ in `#16963 <https://github.com/galaxyproject/galaxy/pull/16963>`_
* Enhancement to Tool Form page, Repeating form fields implement parameter instructions by `@hujambo-dunia <https://github.com/hujambo-dunia>`_ in `#17018 <https://github.com/galaxyproject/galaxy/pull/17018>`_
* Expose file_name property in DatasetFilenameWrapper by `@jdavcs <https://github.com/jdavcs>`_ in `#17107 <https://github.com/galaxyproject/galaxy/pull/17107>`_
* Fix ``to_cwl`` for nested collections by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17276 <https://github.com/galaxyproject/galaxy/pull/17276>`_
* Rollback invalidated transaction by `@jdavcs <https://github.com/jdavcs>`_ in `#17280 <https://github.com/galaxyproject/galaxy/pull/17280>`_
* Install newer celery on python 3.8+ by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17309 <https://github.com/galaxyproject/galaxy/pull/17309>`_
* Backport Rollback invalidated transaction: catch them earlier by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17315 <https://github.com/galaxyproject/galaxy/pull/17315>`_
* Discard sqlalchemy session after task completion by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17317 <https://github.com/galaxyproject/galaxy/pull/17317>`_
* Scope session for job runner monitor loop by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17319 <https://github.com/galaxyproject/galaxy/pull/17319>`_
* Fix History contents `genome_build` filter postgresql bug by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#17384 <https://github.com/galaxyproject/galaxy/pull/17384>`_
* Update python-multipart to 0.0.7 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17429 <https://github.com/galaxyproject/galaxy/pull/17429>`_
* Build param dict before creating entrypoint by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17440 <https://github.com/galaxyproject/galaxy/pull/17440>`_
* Fix bug: true >> True by `@jdavcs <https://github.com/jdavcs>`_ in `#17446 <https://github.com/galaxyproject/galaxy/pull/17446>`_
* Set metadata states on dataset association, not dataset by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17474 <https://github.com/galaxyproject/galaxy/pull/17474>`_
* Remove two print statements by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17480 <https://github.com/galaxyproject/galaxy/pull/17480>`_
* Provide working routes.url_for every ASGI request by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17497 <https://github.com/galaxyproject/galaxy/pull/17497>`_
============
Enhancements
============
* Implement default locations for data and collection parameters. by `@jmchilton <https://github.com/jmchilton>`_ in `#14955 <https://github.com/galaxyproject/galaxy/pull/14955>`_
* Enable job resubmissions in k8s runner by `@pcm32 <https://github.com/pcm32>`_ in `#15238 <https://github.com/galaxyproject/galaxy/pull/15238>`_
* Add parameter name to validation errors by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#15440 <https://github.com/galaxyproject/galaxy/pull/15440>`_
* Tool Shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#15639 <https://github.com/galaxyproject/galaxy/pull/15639>`_
* Add ability to assert metadata properties on input dataset parameters by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#15825 <https://github.com/galaxyproject/galaxy/pull/15825>`_
* Limit number of celery task executions per second per user by `@claudiofr <https://github.com/claudiofr>`_ in `#16232 <https://github.com/galaxyproject/galaxy/pull/16232>`_
* Delete non-terminal jobs and subworkflow invocations when cancelling invocation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16252 <https://github.com/galaxyproject/galaxy/pull/16252>`_
* Towards SQLAlchemy 2.0 (upgrades to SA Core usage) by `@jdavcs <https://github.com/jdavcs>`_ in `#16264 <https://github.com/galaxyproject/galaxy/pull/16264>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16305 <https://github.com/galaxyproject/galaxy/pull/16305>`_
* Add carbon emissions admin configuration options by `@Renni771 <https://github.com/Renni771>`_ in `#16307 <https://github.com/galaxyproject/galaxy/pull/16307>`_
* Migrate a part of the users API to Fast API by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#16341 <https://github.com/galaxyproject/galaxy/pull/16341>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16360 <https://github.com/galaxyproject/galaxy/pull/16360>`_
* Add Invenio RDM repository integration by `@davelopez <https://github.com/davelopez>`_ in `#16381 <https://github.com/galaxyproject/galaxy/pull/16381>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16389 <https://github.com/galaxyproject/galaxy/pull/16389>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16409 <https://github.com/galaxyproject/galaxy/pull/16409>`_
* Refactor FilesDialog + Remote Files API schema improvements by `@davelopez <https://github.com/davelopez>`_ in `#16420 <https://github.com/galaxyproject/galaxy/pull/16420>`_
* Towards SQLAlchemy 2.0 (upgrades to SA ORM usage in /test) by `@jdavcs <https://github.com/jdavcs>`_ in `#16431 <https://github.com/galaxyproject/galaxy/pull/16431>`_
* SQLAlchemy 2.0 upgrades to ORM usage in /lib by `@jdavcs <https://github.com/jdavcs>`_ in `#16434 <https://github.com/galaxyproject/galaxy/pull/16434>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16436 <https://github.com/galaxyproject/galaxy/pull/16436>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16485 <https://github.com/galaxyproject/galaxy/pull/16485>`_
* Rename MetadataEqualsValidator by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16489 <https://github.com/galaxyproject/galaxy/pull/16489>`_
* Add support for CILogon deployments in different regions than the US by `@uwwint <https://github.com/uwwint>`_ in `#16490 <https://github.com/galaxyproject/galaxy/pull/16490>`_
* Refactor/OIDC custos by `@uwwint <https://github.com/uwwint>`_ in `#16497 <https://github.com/galaxyproject/galaxy/pull/16497>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16521 <https://github.com/galaxyproject/galaxy/pull/16521>`_
* Move database access code out of ``galaxy.util`` by `@jdavcs <https://github.com/jdavcs>`_ in `#16526 <https://github.com/galaxyproject/galaxy/pull/16526>`_
* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16536 <https://github.com/galaxyproject/galaxy/pull/16536>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16577 <https://github.com/galaxyproject/galaxy/pull/16577>`_
* Vueify Tool Form Data Selector by `@guerler <https://github.com/guerler>`_ in `#16578 <https://github.com/galaxyproject/galaxy/pull/16578>`_
* Workflow Comments 💬 by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#16612 <https://github.com/galaxyproject/galaxy/pull/16612>`_
* Switch out conditional requirement parser by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16636 <https://github.com/galaxyproject/galaxy/pull/16636>`_
* Add scroll pagination and username filter to `HistoryPublishedList` by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16642 <https://github.com/galaxyproject/galaxy/pull/16642>`_
* Bump samtools converters by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16668 <https://github.com/galaxyproject/galaxy/pull/16668>`_
* Galaxy Markdown - add workflow image and license to Galaxy markdown. by `@jmchilton <https://github.com/jmchilton>`_ in `#16672 <https://github.com/galaxyproject/galaxy/pull/16672>`_
* Implement instance URLs in Galaxy markdown. by `@jmchilton <https://github.com/jmchilton>`_ in `#16675 <https://github.com/galaxyproject/galaxy/pull/16675>`_
* Change Sentry error reporting plug-in by `@kysrpex <https://github.com/kysrpex>`_ in `#16686 <https://github.com/galaxyproject/galaxy/pull/16686>`_
* Use fs.onedatarestfs for Onedata files source plugin implementation by `@lopiola <https://github.com/lopiola>`_ in `#16690 <https://github.com/galaxyproject/galaxy/pull/16690>`_
* Enhance task monitor composable by `@davelopez <https://github.com/davelopez>`_ in `#16695 <https://github.com/galaxyproject/galaxy/pull/16695>`_
* Misc. edits/refactorings to session handling by `@jdavcs <https://github.com/jdavcs>`_ in `#16712 <https://github.com/galaxyproject/galaxy/pull/16712>`_
* SQLAlchemy 2.0 upgrades (part 2) by `@jdavcs <https://github.com/jdavcs>`_ in `#16724 <https://github.com/galaxyproject/galaxy/pull/16724>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16735 <https://github.com/galaxyproject/galaxy/pull/16735>`_
* Convert ISO to UTC for Date/Time in workflow reports by `@assuntad23 <https://github.com/assuntad23>`_ in `#16758 <https://github.com/galaxyproject/galaxy/pull/16758>`_
* Replace ELIXIR AAI button with Life Science login by `@sebastian-schaaf <https://github.com/sebastian-schaaf>`_ in `#16762 <https://github.com/galaxyproject/galaxy/pull/16762>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16770 <https://github.com/galaxyproject/galaxy/pull/16770>`_
* Migrate a part of the jobs API to Fast API by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#16778 <https://github.com/galaxyproject/galaxy/pull/16778>`_
* Add EGI Check-in as OIDC authentication option by `@enolfc <https://github.com/enolfc>`_ in `#16782 <https://github.com/galaxyproject/galaxy/pull/16782>`_
* Replace file_name property with get_file_name function by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#16783 <https://github.com/galaxyproject/galaxy/pull/16783>`_
* Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by `@sveinugu <https://github.com/sveinugu>`_ in `#16795 <https://github.com/galaxyproject/galaxy/pull/16795>`_
* Galaxy help forum integration by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#16798 <https://github.com/galaxyproject/galaxy/pull/16798>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16807 <https://github.com/galaxyproject/galaxy/pull/16807>`_
* Another batch of SA2.0 edits in TS2.0 (part 3) by `@jdavcs <https://github.com/jdavcs>`_ in `#16833 <https://github.com/galaxyproject/galaxy/pull/16833>`_
* Remove remaining legacy backbone form input elements by `@guerler <https://github.com/guerler>`_ in `#16834 <https://github.com/galaxyproject/galaxy/pull/16834>`_
* SQLAlchemy 2.0 upgrades (part 4) by `@jdavcs <https://github.com/jdavcs>`_ in `#16852 <https://github.com/galaxyproject/galaxy/pull/16852>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16853 <https://github.com/galaxyproject/galaxy/pull/16853>`_
* Drop unused HistoryContentManager code and related tests by `@jdavcs <https://github.com/jdavcs>`_ in `#16882 <https://github.com/galaxyproject/galaxy/pull/16882>`_
* Vueify Visualizations Grid by `@guerler <https://github.com/guerler>`_ in `#16892 <https://github.com/galaxyproject/galaxy/pull/16892>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16896 <https://github.com/galaxyproject/galaxy/pull/16896>`_
* Enable some flake8-logging-format rules in ruff by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16915 <https://github.com/galaxyproject/galaxy/pull/16915>`_
* Remove "Create Workflow" form and allow workflow creation in editor by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16938 <https://github.com/galaxyproject/galaxy/pull/16938>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16939 <https://github.com/galaxyproject/galaxy/pull/16939>`_
* Add helper to get dataset or collection via ``src`` and ``id`` by `@mr-c <https://github.com/mr-c>`_ in `#16953 <https://github.com/galaxyproject/galaxy/pull/16953>`_
* Allow non-optional integer/float params without value attribute by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16966 <https://github.com/galaxyproject/galaxy/pull/16966>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16978 <https://github.com/galaxyproject/galaxy/pull/16978>`_
* Fix invocation report to target correct workflow version. by `@jmchilton <https://github.com/jmchilton>`_ in `#17008 <https://github.com/galaxyproject/galaxy/pull/17008>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17011 <https://github.com/galaxyproject/galaxy/pull/17011>`_
* Upgrade job manager's index_query method to SA2.0 by `@jdavcs <https://github.com/jdavcs>`_ in `#17020 <https://github.com/galaxyproject/galaxy/pull/17020>`_
* optimize object store cache operations by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#17025 <https://github.com/galaxyproject/galaxy/pull/17025>`_
* Require name for workflows on save, set default to Unnamed Workflow by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#17038 <https://github.com/galaxyproject/galaxy/pull/17038>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17050 <https://github.com/galaxyproject/galaxy/pull/17050>`_
* Migrate groups API to fastAPI by `@arash77 <https://github.com/arash77>`_ in `#17051 <https://github.com/galaxyproject/galaxy/pull/17051>`_
* Migrate ItemTags API to FastAPI by `@arash77 <https://github.com/arash77>`_ in `#17064 <https://github.com/galaxyproject/galaxy/pull/17064>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#17084 <https://github.com/galaxyproject/galaxy/pull/17084>`_
* Use python-isal for fast zip deflate compression in rocrate export by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17342 <https://github.com/galaxyproject/galaxy/pull/17342>`_
=============
Other changes
=============
* Merge 23.1 into dev by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16534 <https://github.com/galaxyproject/galaxy/pull/16534>`_
* Revert "[23.1] Enable job resubmissions in k8s runner" by `@nuwang <https://github.com/nuwang>`_ in `#17323 <https://github.com/galaxyproject/galaxy/pull/17323>`_
* Fix succces typo by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17481 <https://github.com/galaxyproject/galaxy/pull/17481>`_
-------------------
23.1.4 (2024-01-04)
packages/app/setup.cfg
+2 -2
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@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-app
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
@@ -86,4 +86,4 @@ console_scripts =
[options.packages.find]
exclude =
galaxy.tools.bundled*
tests*
tests*
packages/auth/HISTORY.rst
+4 -4
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@@ -3,11 +3,11 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
No recorded changes since last release
-------------------
23.1.4 (2024-01-04)
packages/auth/setup.cfg
+1 -1
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@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-auth
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
packages/config/HISTORY.rst
+47 -3
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@@ -3,11 +3,55 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
=========
Bug fixes
=========
* pin fs.dropboxfs to >=1 by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16451 <https://github.com/galaxyproject/galaxy/pull/16451>`_
* MINERVA display application: enable cors, add for tabular by `@hexylena <https://github.com/hexylena>`_ in `#16737 <https://github.com/galaxyproject/galaxy/pull/16737>`_
* chore: fix typos by `@afuetterer <https://github.com/afuetterer>`_ in `#16851 <https://github.com/galaxyproject/galaxy/pull/16851>`_
* Add back 1.1.0 version of Filtering1 tool by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16883 <https://github.com/galaxyproject/galaxy/pull/16883>`_
* Set webdav file source to use temp files by default by `@davelopez <https://github.com/davelopez>`_ in `#17388 <https://github.com/galaxyproject/galaxy/pull/17388>`_
============
Enhancements
============
* Update cellxgene interactive tool to 1.1.1 by `@pcm32 <https://github.com/pcm32>`_ in `#15313 <https://github.com/galaxyproject/galaxy/pull/15313>`_
* Tool Shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#15639 <https://github.com/galaxyproject/galaxy/pull/15639>`_
* Limit number of celery task executions per second per user by `@claudiofr <https://github.com/claudiofr>`_ in `#16232 <https://github.com/galaxyproject/galaxy/pull/16232>`_
* Add carbon emissions admin configuration options by `@Renni771 <https://github.com/Renni771>`_ in `#16307 <https://github.com/galaxyproject/galaxy/pull/16307>`_
* Add Invenio RDM repository integration by `@davelopez <https://github.com/davelopez>`_ in `#16381 <https://github.com/galaxyproject/galaxy/pull/16381>`_
* Add new datatype: STL by `@TanguyGen <https://github.com/TanguyGen>`_ in `#16478 <https://github.com/galaxyproject/galaxy/pull/16478>`_
* add new tabular file formats cns,cnr and cnn to datatypes_conf.xml.sample file as they are neaded for cnvkit galaxy tools by `@khaled196 <https://github.com/khaled196>`_ in `#16503 <https://github.com/galaxyproject/galaxy/pull/16503>`_
* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16536 <https://github.com/galaxyproject/galaxy/pull/16536>`_
* Implement datatype upload warnings by `@jmchilton <https://github.com/jmchilton>`_ in `#16564 <https://github.com/galaxyproject/galaxy/pull/16564>`_
* Support new genome browser chain file format by `@claudiofr <https://github.com/claudiofr>`_ in `#16576 <https://github.com/galaxyproject/galaxy/pull/16576>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16577 <https://github.com/galaxyproject/galaxy/pull/16577>`_
* Implement instance URLs in Galaxy markdown. by `@jmchilton <https://github.com/jmchilton>`_ in `#16675 <https://github.com/galaxyproject/galaxy/pull/16675>`_
* Use fs.onedatarestfs for Onedata files source plugin implementation by `@lopiola <https://github.com/lopiola>`_ in `#16690 <https://github.com/galaxyproject/galaxy/pull/16690>`_
* Update datatypes_conf.xml.sample with docx type by `@yvanlebras <https://github.com/yvanlebras>`_ in `#16713 <https://github.com/galaxyproject/galaxy/pull/16713>`_
* Replace ELIXIR AAI button with Life Science login by `@sebastian-schaaf <https://github.com/sebastian-schaaf>`_ in `#16762 <https://github.com/galaxyproject/galaxy/pull/16762>`_
* Add EGI Check-in as OIDC authentication option by `@enolfc <https://github.com/enolfc>`_ in `#16782 <https://github.com/galaxyproject/galaxy/pull/16782>`_
* Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by `@sveinugu <https://github.com/sveinugu>`_ in `#16795 <https://github.com/galaxyproject/galaxy/pull/16795>`_
* Galaxy help forum integration by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#16798 <https://github.com/galaxyproject/galaxy/pull/16798>`_
* Remove record access handling for Invenio RDM plugin by `@davelopez <https://github.com/davelopez>`_ in `#16900 <https://github.com/galaxyproject/galaxy/pull/16900>`_
* optimize object store cache operations by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#17025 <https://github.com/galaxyproject/galaxy/pull/17025>`_
* Support configuring job metrics inline, update documentation by `@natefoo <https://github.com/natefoo>`_ in `#17178 <https://github.com/galaxyproject/galaxy/pull/17178>`_
* Add binary datatypes for intermediate output of fastk tools by `@astrovsky01 <https://github.com/astrovsky01>`_ in `#17265 <https://github.com/galaxyproject/galaxy/pull/17265>`_
* Add magres datatype by `@martenson <https://github.com/martenson>`_ in `#17499 <https://github.com/galaxyproject/galaxy/pull/17499>`_
=============
Other changes
=============
* Merge 23.1 into dev by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16534 <https://github.com/galaxyproject/galaxy/pull/16534>`_
* Remove xml remnant in sample yml job conf by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16609 <https://github.com/galaxyproject/galaxy/pull/16609>`_
-------------------
23.1.4 (2024-01-04)
packages/config/setup.cfg
+1 -1
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-config
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
packages/data/HISTORY.rst
+67 -3
View File
@@ -3,11 +3,75 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
=========
Bug fixes
=========
* Rename to_dict to populate in FormDefintion to fix bug by `@jdavcs <https://github.com/jdavcs>`_ in `#16553 <https://github.com/galaxyproject/galaxy/pull/16553>`_
* MINERVA display application: enable cors, add for tabular by `@hexylena <https://github.com/hexylena>`_ in `#16737 <https://github.com/galaxyproject/galaxy/pull/16737>`_
* Use AlignedSegment.to_string by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16803 <https://github.com/galaxyproject/galaxy/pull/16803>`_
* Ruff and flake8 fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16884 <https://github.com/galaxyproject/galaxy/pull/16884>`_
* prep for updated h5py and typos by `@mr-c <https://github.com/mr-c>`_ in `#16963 <https://github.com/galaxyproject/galaxy/pull/16963>`_
* Fix cardinality violation error: subquery returns multiple results by `@jdavcs <https://github.com/jdavcs>`_ in `#17224 <https://github.com/galaxyproject/galaxy/pull/17224>`_
* Fix Display Application link generation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17227 <https://github.com/galaxyproject/galaxy/pull/17227>`_
* Display application fixes and tests by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17233 <https://github.com/galaxyproject/galaxy/pull/17233>`_
* Rollback invalidated transaction by `@jdavcs <https://github.com/jdavcs>`_ in `#17280 <https://github.com/galaxyproject/galaxy/pull/17280>`_
* Set metadata states on dataset association, not dataset by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17474 <https://github.com/galaxyproject/galaxy/pull/17474>`_
* Provide working routes.url_for every ASGI request by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17497 <https://github.com/galaxyproject/galaxy/pull/17497>`_
============
Enhancements
============
* Implement default locations for data and collection parameters. by `@jmchilton <https://github.com/jmchilton>`_ in `#14955 <https://github.com/galaxyproject/galaxy/pull/14955>`_
* Display beginning of non-text files as text instead of triggering a download by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#15447 <https://github.com/galaxyproject/galaxy/pull/15447>`_
* Tool Shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#15639 <https://github.com/galaxyproject/galaxy/pull/15639>`_
* Limit number of celery task executions per second per user by `@claudiofr <https://github.com/claudiofr>`_ in `#16232 <https://github.com/galaxyproject/galaxy/pull/16232>`_
* Delete non-terminal jobs and subworkflow invocations when cancelling invocation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16252 <https://github.com/galaxyproject/galaxy/pull/16252>`_
* Towards SQLAlchemy 2.0 (upgrades to SA Core usage) by `@jdavcs <https://github.com/jdavcs>`_ in `#16264 <https://github.com/galaxyproject/galaxy/pull/16264>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16409 <https://github.com/galaxyproject/galaxy/pull/16409>`_
* Towards SQLAlchemy 2.0 (upgrades to SA ORM usage in /test) by `@jdavcs <https://github.com/jdavcs>`_ in `#16431 <https://github.com/galaxyproject/galaxy/pull/16431>`_
* SQLAlchemy 2.0 upgrades to ORM usage in /lib by `@jdavcs <https://github.com/jdavcs>`_ in `#16434 <https://github.com/galaxyproject/galaxy/pull/16434>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16436 <https://github.com/galaxyproject/galaxy/pull/16436>`_
* Implement datatype upload warnings by `@jmchilton <https://github.com/jmchilton>`_ in `#16564 <https://github.com/galaxyproject/galaxy/pull/16564>`_
* Support new genome browser chain file format by `@claudiofr <https://github.com/claudiofr>`_ in `#16576 <https://github.com/galaxyproject/galaxy/pull/16576>`_
* Workflow Comments 💬 by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#16612 <https://github.com/galaxyproject/galaxy/pull/16612>`_
* Bump samtools converters by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16668 <https://github.com/galaxyproject/galaxy/pull/16668>`_
* Misc. edits/refactorings to session handling by `@jdavcs <https://github.com/jdavcs>`_ in `#16712 <https://github.com/galaxyproject/galaxy/pull/16712>`_
* SQLAlchemy 2.0 upgrades (part 2) by `@jdavcs <https://github.com/jdavcs>`_ in `#16724 <https://github.com/galaxyproject/galaxy/pull/16724>`_
* Migrate `collection elements` store to Pinia by `@davelopez <https://github.com/davelopez>`_ in `#16725 <https://github.com/galaxyproject/galaxy/pull/16725>`_
* Reset autocommit to False by `@jdavcs <https://github.com/jdavcs>`_ in `#16745 <https://github.com/galaxyproject/galaxy/pull/16745>`_
* Drop legacy server-side search by `@jdavcs <https://github.com/jdavcs>`_ in `#16755 <https://github.com/galaxyproject/galaxy/pull/16755>`_
* Optimize iteration in DatasetInstance model + SA2.0 fix by `@jdavcs <https://github.com/jdavcs>`_ in `#16776 <https://github.com/galaxyproject/galaxy/pull/16776>`_
* Migrate a part of the jobs API to Fast API by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#16778 <https://github.com/galaxyproject/galaxy/pull/16778>`_
* Replace file_name property with get_file_name function by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#16783 <https://github.com/galaxyproject/galaxy/pull/16783>`_
* Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by `@sveinugu <https://github.com/sveinugu>`_ in `#16795 <https://github.com/galaxyproject/galaxy/pull/16795>`_
* Allow partial matches in workflow name tag search and search all tags for unquoted query by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16860 <https://github.com/galaxyproject/galaxy/pull/16860>`_
* Vueify Visualizations Grid by `@guerler <https://github.com/guerler>`_ in `#16892 <https://github.com/galaxyproject/galaxy/pull/16892>`_
* Standardize to W3C naming for color. by `@dannon <https://github.com/dannon>`_ in `#16949 <https://github.com/galaxyproject/galaxy/pull/16949>`_
* Move and re-use persist_extra_files by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16955 <https://github.com/galaxyproject/galaxy/pull/16955>`_
* Fix invocation report to target correct workflow version. by `@jmchilton <https://github.com/jmchilton>`_ in `#17008 <https://github.com/galaxyproject/galaxy/pull/17008>`_
* optimize object store cache operations by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#17025 <https://github.com/galaxyproject/galaxy/pull/17025>`_
* Use python-isal for fast zip deflate compression in rocrate export by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17342 <https://github.com/galaxyproject/galaxy/pull/17342>`_
* Add magres datatype by `@martenson <https://github.com/martenson>`_ in `#17499 <https://github.com/galaxyproject/galaxy/pull/17499>`_
=============
Other changes
=============
* Merge 23.1 into dev by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16534 <https://github.com/galaxyproject/galaxy/pull/16534>`_
* Merge release_23.1 into dev by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16768 <https://github.com/galaxyproject/galaxy/pull/16768>`_
* Create db head merge revision. by `@dannon <https://github.com/dannon>`_ in `#16838 <https://github.com/galaxyproject/galaxy/pull/16838>`_
* merge release_23.1 into dev by `@martenson <https://github.com/martenson>`_ in `#16933 <https://github.com/galaxyproject/galaxy/pull/16933>`_
* Minor clarification/typo fix in datatypes.data by `@dannon <https://github.com/dannon>`_ in `#16993 <https://github.com/galaxyproject/galaxy/pull/16993>`_
* Fix `.file_name` access in merge forward by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17097 <https://github.com/galaxyproject/galaxy/pull/17097>`_
* Backport model store fixes by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17439 <https://github.com/galaxyproject/galaxy/pull/17439>`_
* Fix succces typo by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17481 <https://github.com/galaxyproject/galaxy/pull/17481>`_
-------------------
23.1.4 (2024-01-04)
packages/data/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-data
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
@@ -72,4 +72,4 @@ console_scripts =
[options.packages.find]
exclude =
tests*
tests*
packages/files/HISTORY.rst
+21 -3
View File
@@ -3,11 +3,29 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
=========
Bug fixes
=========
* pin fs.dropboxfs to >=1 by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16451 <https://github.com/galaxyproject/galaxy/pull/16451>`_
* Write to a temp filename in posix file source plugin by `@natefoo <https://github.com/natefoo>`_ in `#17350 <https://github.com/galaxyproject/galaxy/pull/17350>`_
* Set webdav file source to use temp files by default by `@davelopez <https://github.com/davelopez>`_ in `#17388 <https://github.com/galaxyproject/galaxy/pull/17388>`_
* More defensive access of extra props in filesources by `@nuwang <https://github.com/nuwang>`_ in `#17445 <https://github.com/galaxyproject/galaxy/pull/17445>`_
============
Enhancements
============
* Add Invenio RDM repository integration by `@davelopez <https://github.com/davelopez>`_ in `#16381 <https://github.com/galaxyproject/galaxy/pull/16381>`_
* Refactor FilesDialog + Remote Files API schema improvements by `@davelopez <https://github.com/davelopez>`_ in `#16420 <https://github.com/galaxyproject/galaxy/pull/16420>`_
* Use fs.onedatarestfs for Onedata files source plugin implementation by `@lopiola <https://github.com/lopiola>`_ in `#16690 <https://github.com/galaxyproject/galaxy/pull/16690>`_
* Remove record access handling for Invenio RDM plugin by `@davelopez <https://github.com/davelopez>`_ in `#16900 <https://github.com/galaxyproject/galaxy/pull/16900>`_
* Enhance Invenio RDM integration by `@davelopez <https://github.com/davelopez>`_ in `#16964 <https://github.com/galaxyproject/galaxy/pull/16964>`_
-------------------
23.1.4 (2024-01-04)
packages/files/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-files
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
@@ -41,4 +41,4 @@ python_requires = >=3.7
[options.packages.find]
exclude =
tests*
tests*
packages/job_execution/HISTORY.rst
+11 -3
View File
@@ -3,11 +3,19 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
============
Enhancements
============
* Replace file_name property with get_file_name function by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#16783 <https://github.com/galaxyproject/galaxy/pull/16783>`_
* Enable some flake8-logging-format rules in ruff by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16915 <https://github.com/galaxyproject/galaxy/pull/16915>`_
* Move and re-use persist_extra_files by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16955 <https://github.com/galaxyproject/galaxy/pull/16955>`_
* optimize object store cache operations by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#17025 <https://github.com/galaxyproject/galaxy/pull/17025>`_
-------------------
23.1.4 (2024-01-04)
packages/job_execution/setup.cfg
+1 -1
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-job-execution
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
packages/job_metrics/HISTORY.rst
+14 -3
View File
@@ -3,11 +3,22 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
=========
Bug fixes
=========
* Add support for Cgroupsv2 by `@natefoo <https://github.com/natefoo>`_ in `#17169 <https://github.com/galaxyproject/galaxy/pull/17169>`_
============
Enhancements
============
* Support configuring job metrics inline, update documentation by `@natefoo <https://github.com/natefoo>`_ in `#17178 <https://github.com/galaxyproject/galaxy/pull/17178>`_
-------------------
23.1.4 (2024-01-04)
packages/job_metrics/setup.cfg
+1 -1
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-job-metrics
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
packages/navigation/HISTORY.rst
+4 -4
View File
@@ -3,11 +3,11 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
No recorded changes since last release
-------------------
23.1.4 (2024-01-04)
packages/navigation/setup.cfg
+1 -1
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-navigation
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
packages/objectstore/HISTORY.rst
+15 -3
View File
@@ -3,11 +3,23 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
============
Enhancements
============
* Move and re-use persist_extra_files by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16955 <https://github.com/galaxyproject/galaxy/pull/16955>`_
* optimize object store cache operations by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#17025 <https://github.com/galaxyproject/galaxy/pull/17025>`_
=============
Other changes
=============
* Merge 23.1 into dev by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16534 <https://github.com/galaxyproject/galaxy/pull/16534>`_
-------------------
23.1.4 (2024-01-04)
packages/objectstore/setup.cfg
+1 -1
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-objectstore
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
packages/schema/HISTORY.rst
+4 -4
View File
@@ -3,8 +3,8 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
* First release.
First release
packages/schema/setup.cfg
+2 -2
View File
@@ -26,7 +26,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-schema
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
@@ -38,4 +38,4 @@ python_requires = >=3.7
[options.packages.find]
exclude =
tests*
tests*
packages/selenium/HISTORY.rst
+15 -3
View File
@@ -3,11 +3,23 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
============
Enhancements
============
* Vueify Data Uploader by `@guerler <https://github.com/guerler>`_ in `#16472 <https://github.com/galaxyproject/galaxy/pull/16472>`_
* Create reusable `FilterMenu` with advanced options by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16522 <https://github.com/galaxyproject/galaxy/pull/16522>`_
* Implement datatype upload warnings by `@jmchilton <https://github.com/jmchilton>`_ in `#16564 <https://github.com/galaxyproject/galaxy/pull/16564>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16577 <https://github.com/galaxyproject/galaxy/pull/16577>`_
* Vueify Tool Form Data Selector by `@guerler <https://github.com/guerler>`_ in `#16578 <https://github.com/galaxyproject/galaxy/pull/16578>`_
* Workflow Comments 💬 by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#16612 <https://github.com/galaxyproject/galaxy/pull/16612>`_
* Workflow Embed by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#16657 <https://github.com/galaxyproject/galaxy/pull/16657>`_
* Remove "Create Workflow" form and allow workflow creation in editor by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16938 <https://github.com/galaxyproject/galaxy/pull/16938>`_
-------------------
23.1.4 (2024-01-04)
packages/selenium/setup.cfg
+1 -1
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-selenium
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
packages/test_api/HISTORY.rst
+34 -3
View File
@@ -3,11 +3,42 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
=========
Bug fixes
=========
* Fix: serialize `tool_shed_urls` directly from the API by `@davelopez <https://github.com/davelopez>`_ in `#16561 <https://github.com/galaxyproject/galaxy/pull/16561>`_
* Restore ToolsApi and create new api route for new panel structure by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16872 <https://github.com/galaxyproject/galaxy/pull/16872>`_
* Ruff and flake8 fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16884 <https://github.com/galaxyproject/galaxy/pull/16884>`_
* Make payload optional again for create tag API by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17144 <https://github.com/galaxyproject/galaxy/pull/17144>`_
* Only check access permissions in `/api/{history_dataset_collection_id}/contents/{dataset_collection_id}` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17459 <https://github.com/galaxyproject/galaxy/pull/17459>`_
============
Enhancements
============
* Implement default locations for data and collection parameters. by `@jmchilton <https://github.com/jmchilton>`_ in `#14955 <https://github.com/galaxyproject/galaxy/pull/14955>`_
* Delete non-terminal jobs and subworkflow invocations when cancelling invocation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16252 <https://github.com/galaxyproject/galaxy/pull/16252>`_
* Migrate a part of the users API to Fast API by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#16341 <https://github.com/galaxyproject/galaxy/pull/16341>`_
* Refactor Tool Panel views structures and combine ToolBox and ToolBoxWorkflow into one component by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16739 <https://github.com/galaxyproject/galaxy/pull/16739>`_
* Don't copy collection elements in ``test_dataset_collection_hide_originals`` by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16747 <https://github.com/galaxyproject/galaxy/pull/16747>`_
* Drop legacy server-side search by `@jdavcs <https://github.com/jdavcs>`_ in `#16755 <https://github.com/galaxyproject/galaxy/pull/16755>`_
* Migrate a part of the jobs API to Fast API by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#16778 <https://github.com/galaxyproject/galaxy/pull/16778>`_
* Vueify Visualizations Grid by `@guerler <https://github.com/guerler>`_ in `#16892 <https://github.com/galaxyproject/galaxy/pull/16892>`_
* Change `api/tool_panel` to `api/tool_panels/...` by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16928 <https://github.com/galaxyproject/galaxy/pull/16928>`_
* Require name for workflows on save, set default to Unnamed Workflow by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#17038 <https://github.com/galaxyproject/galaxy/pull/17038>`_
* Migrate ItemTags API to FastAPI by `@arash77 <https://github.com/arash77>`_ in `#17064 <https://github.com/galaxyproject/galaxy/pull/17064>`_
=============
Other changes
=============
* Merge 23.1 into dev by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16534 <https://github.com/galaxyproject/galaxy/pull/16534>`_
-------------------
23.1.4 (2024-01-04)
packages/test_api/setup.cfg
+1 -1
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-test-api
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
packages/test_base/HISTORY.rst
+18 -3
View File
@@ -3,11 +3,26 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
=========
Bug fixes
=========
* Restore ToolsApi and create new api route for new panel structure by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16872 <https://github.com/galaxyproject/galaxy/pull/16872>`_
============
Enhancements
============
* Implement default locations for data and collection parameters. by `@jmchilton <https://github.com/jmchilton>`_ in `#14955 <https://github.com/galaxyproject/galaxy/pull/14955>`_
* Delete non-terminal jobs and subworkflow invocations when cancelling invocation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16252 <https://github.com/galaxyproject/galaxy/pull/16252>`_
* Augment pgcleanup to allow periodically deleting old datasets. by `@jmchilton <https://github.com/jmchilton>`_ in `#16340 <https://github.com/galaxyproject/galaxy/pull/16340>`_
* Refactor Tool Panel views structures and combine ToolBox and ToolBoxWorkflow into one component by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16739 <https://github.com/galaxyproject/galaxy/pull/16739>`_
* Change `api/tool_panel` to `api/tool_panels/...` by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16928 <https://github.com/galaxyproject/galaxy/pull/16928>`_
-------------------
23.1.4 (2024-01-04)
packages/test_base/setup.cfg
+1 -1
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-test-base
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
packages/test_driver/HISTORY.rst
+15 -3
View File
@@ -3,11 +3,23 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
=========
Bug fixes
=========
* Tool Shed 2.0 fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16825 <https://github.com/galaxyproject/galaxy/pull/16825>`_
============
Enhancements
============
* Limit number of celery task executions per second per user by `@claudiofr <https://github.com/claudiofr>`_ in `#16232 <https://github.com/galaxyproject/galaxy/pull/16232>`_
* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16536 <https://github.com/galaxyproject/galaxy/pull/16536>`_
-------------------
23.1.4 (2024-01-04)
packages/test_driver/setup.cfg
+1 -1
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-test-driver
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
packages/tool_shed/HISTORY.rst
+4 -4
View File
@@ -3,8 +3,8 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
* First release.
First release
packages/tool_shed/setup.cfg
+2 -2
View File
@@ -26,7 +26,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-tool-shed
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
@@ -38,4 +38,4 @@ python_requires = >=3.7
[options.packages.find]
exclude =
tests*
tests*
packages/tool_util/HISTORY.rst
+41 -3
View File
@@ -3,11 +3,49 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
=========
Bug fixes
=========
* Never consider `_galaxy_` conda env as unused by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16460 <https://github.com/galaxyproject/galaxy/pull/16460>`_
* chore: fix typos by `@afuetterer <https://github.com/afuetterer>`_ in `#16851 <https://github.com/galaxyproject/galaxy/pull/16851>`_
* Ruff and flake8 fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16884 <https://github.com/galaxyproject/galaxy/pull/16884>`_
* Quote singularity env parameters by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17055 <https://github.com/galaxyproject/galaxy/pull/17055>`_
* Remove duplicates when copying sections for tool panel view by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#17117 <https://github.com/galaxyproject/galaxy/pull/17117>`_
* Display application fixes and tests by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17233 <https://github.com/galaxyproject/galaxy/pull/17233>`_
============
Enhancements
============
* Implement default locations for data and collection parameters. by `@jmchilton <https://github.com/jmchilton>`_ in `#14955 <https://github.com/galaxyproject/galaxy/pull/14955>`_
* Add framework test for profile behavior of `format="input"` by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#15482 <https://github.com/galaxyproject/galaxy/pull/15482>`_
* Tool Shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#15639 <https://github.com/galaxyproject/galaxy/pull/15639>`_
* Add ability to assert metadata properties on input dataset parameters by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#15825 <https://github.com/galaxyproject/galaxy/pull/15825>`_
* Migrate a part of the users API to Fast API by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#16341 <https://github.com/galaxyproject/galaxy/pull/16341>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16436 <https://github.com/galaxyproject/galaxy/pull/16436>`_
* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16536 <https://github.com/galaxyproject/galaxy/pull/16536>`_
* Document that required text parameters need a validator by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16538 <https://github.com/galaxyproject/galaxy/pull/16538>`_
* Include `regex` when linting validators by `@davelopez <https://github.com/davelopez>`_ in `#16684 <https://github.com/galaxyproject/galaxy/pull/16684>`_
* Refactor Tool Panel views structures and combine ToolBox and ToolBoxWorkflow into one component by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16739 <https://github.com/galaxyproject/galaxy/pull/16739>`_
* Replace file_name property with get_file_name function by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#16783 <https://github.com/galaxyproject/galaxy/pull/16783>`_
* Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by `@sveinugu <https://github.com/sveinugu>`_ in `#16795 <https://github.com/galaxyproject/galaxy/pull/16795>`_
* Remove remaining legacy backbone form input elements by `@guerler <https://github.com/guerler>`_ in `#16834 <https://github.com/galaxyproject/galaxy/pull/16834>`_
* Change `api/tool_panel` to `api/tool_panels/...` by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16928 <https://github.com/galaxyproject/galaxy/pull/16928>`_
* optimize object store cache operations by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#17025 <https://github.com/galaxyproject/galaxy/pull/17025>`_
* Enhance xsd schema and allow simpler assertion lists by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17134 <https://github.com/galaxyproject/galaxy/pull/17134>`_
=============
Other changes
=============
* Merge 23.1 into dev by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16534 <https://github.com/galaxyproject/galaxy/pull/16534>`_
* Explicitly document default of multiple by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16625 <https://github.com/galaxyproject/galaxy/pull/16625>`_
-------------------
23.1.4 (2024-01-04)
packages/tool_util/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-tool-util
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
@@ -68,4 +68,4 @@ edam =
[options.packages.find]
exclude =
tests*
tests*
packages/tours/HISTORY.rst
+4 -4
View File
@@ -3,11 +3,11 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
No recorded changes since last release
-------------------
23.1.4 (2024-01-04)
packages/tours/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-tours
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
@@ -44,4 +44,4 @@ console_scripts =
[options.packages.find]
exclude =
tests*
tests*
packages/util/HISTORY.rst
+25 -3
View File
@@ -3,11 +3,33 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
=========
Bug fixes
=========
* Ruff and flake8 fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16884 <https://github.com/galaxyproject/galaxy/pull/16884>`_
============
Enhancements
============
* Tool Shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#15639 <https://github.com/galaxyproject/galaxy/pull/15639>`_
* Move database access code out of ``galaxy.util`` by `@jdavcs <https://github.com/jdavcs>`_ in `#16526 <https://github.com/galaxyproject/galaxy/pull/16526>`_
* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16536 <https://github.com/galaxyproject/galaxy/pull/16536>`_
* Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by `@sveinugu <https://github.com/sveinugu>`_ in `#16795 <https://github.com/galaxyproject/galaxy/pull/16795>`_
* Allow partial matches in workflow name tag search and search all tags for unquoted query by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16860 <https://github.com/galaxyproject/galaxy/pull/16860>`_
* Use python-isal for fast zip deflate compression in rocrate export by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17342 <https://github.com/galaxyproject/galaxy/pull/17342>`_
=============
Other changes
=============
* Merge 23.1 into dev by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16534 <https://github.com/galaxyproject/galaxy/pull/16534>`_
-------------------
23.1.4 (2024-01-04)
packages/util/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-util
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
@@ -55,4 +55,4 @@ template =
[options.packages.find]
exclude =
tests*
tests*
packages/web_apps/HISTORY.rst
+70 -3
View File
@@ -3,11 +3,78 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
=========
Bug fixes
=========
* Rename to_dict to populate in FormDefintion to fix bug by `@jdavcs <https://github.com/jdavcs>`_ in `#16553 <https://github.com/galaxyproject/galaxy/pull/16553>`_
* Fix: serialize `tool_shed_urls` directly from the API by `@davelopez <https://github.com/davelopez>`_ in `#16561 <https://github.com/galaxyproject/galaxy/pull/16561>`_
* chore: fix typos by `@afuetterer <https://github.com/afuetterer>`_ in `#16851 <https://github.com/galaxyproject/galaxy/pull/16851>`_
* Restore ToolsApi and create new api route for new panel structure by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16872 <https://github.com/galaxyproject/galaxy/pull/16872>`_
* Ruff and flake8 fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16884 <https://github.com/galaxyproject/galaxy/pull/16884>`_
* Make payload optional again for create tag API by `@nsoranzo <https://github.com/nsoranzo>`_ in `#17144 <https://github.com/galaxyproject/galaxy/pull/17144>`_
* Fix Display Application link generation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17227 <https://github.com/galaxyproject/galaxy/pull/17227>`_
* Display application fixes and tests by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17233 <https://github.com/galaxyproject/galaxy/pull/17233>`_
* Respect ``upstream_gzip`` setting when streaming dataset collection archive by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17400 <https://github.com/galaxyproject/galaxy/pull/17400>`_
* Fix history bulk operations menu conditions by `@davelopez <https://github.com/davelopez>`_ in `#17433 <https://github.com/galaxyproject/galaxy/pull/17433>`_
* Only check access permissions in `/api/{history_dataset_collection_id}/contents/{dataset_collection_id}` by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17459 <https://github.com/galaxyproject/galaxy/pull/17459>`_
* Set metadata states on dataset association, not dataset by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17474 <https://github.com/galaxyproject/galaxy/pull/17474>`_
* Provide working routes.url_for every ASGI request by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17497 <https://github.com/galaxyproject/galaxy/pull/17497>`_
============
Enhancements
============
* Tool Shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#15639 <https://github.com/galaxyproject/galaxy/pull/15639>`_
* Limit number of celery task executions per second per user by `@claudiofr <https://github.com/claudiofr>`_ in `#16232 <https://github.com/galaxyproject/galaxy/pull/16232>`_
* Delete non-terminal jobs and subworkflow invocations when cancelling invocation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16252 <https://github.com/galaxyproject/galaxy/pull/16252>`_
* Towards SQLAlchemy 2.0 (upgrades to SA Core usage) by `@jdavcs <https://github.com/jdavcs>`_ in `#16264 <https://github.com/galaxyproject/galaxy/pull/16264>`_
* Notifications admin panel by `@itisAliRH <https://github.com/itisAliRH>`_ in `#16278 <https://github.com/galaxyproject/galaxy/pull/16278>`_
* Migrate cloud API to Fast API by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#16296 <https://github.com/galaxyproject/galaxy/pull/16296>`_
* Drop (admin only) userskeys controller by `@dannon <https://github.com/dannon>`_ in `#16318 <https://github.com/galaxyproject/galaxy/pull/16318>`_
* Migrate a part of the users API to Fast API by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#16341 <https://github.com/galaxyproject/galaxy/pull/16341>`_
* Add Invenio RDM repository integration by `@davelopez <https://github.com/davelopez>`_ in `#16381 <https://github.com/galaxyproject/galaxy/pull/16381>`_
* Refactor FilesDialog + Remote Files API schema improvements by `@davelopez <https://github.com/davelopez>`_ in `#16420 <https://github.com/galaxyproject/galaxy/pull/16420>`_
* SQLAlchemy 2.0 upgrades to ORM usage in /lib by `@jdavcs <https://github.com/jdavcs>`_ in `#16434 <https://github.com/galaxyproject/galaxy/pull/16434>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16436 <https://github.com/galaxyproject/galaxy/pull/16436>`_
* Published Workflow Sharing Page Overhaul by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#16510 <https://github.com/galaxyproject/galaxy/pull/16510>`_
* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16536 <https://github.com/galaxyproject/galaxy/pull/16536>`_
* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#16577 <https://github.com/galaxyproject/galaxy/pull/16577>`_
* Workflow Comments 💬 by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#16612 <https://github.com/galaxyproject/galaxy/pull/16612>`_
* Galaxy Markdown - add workflow image and license to Galaxy markdown. by `@jmchilton <https://github.com/jmchilton>`_ in `#16672 <https://github.com/galaxyproject/galaxy/pull/16672>`_
* Implement instance URLs in Galaxy markdown. by `@jmchilton <https://github.com/jmchilton>`_ in `#16675 <https://github.com/galaxyproject/galaxy/pull/16675>`_
* Enhance task monitor composable by `@davelopez <https://github.com/davelopez>`_ in `#16695 <https://github.com/galaxyproject/galaxy/pull/16695>`_
* SQLAlchemy 2.0 upgrades (part 2) by `@jdavcs <https://github.com/jdavcs>`_ in `#16724 <https://github.com/galaxyproject/galaxy/pull/16724>`_
* Migrate `collection elements` store to Pinia by `@davelopez <https://github.com/davelopez>`_ in `#16725 <https://github.com/galaxyproject/galaxy/pull/16725>`_
* Refactor Tool Panel views structures and combine ToolBox and ToolBoxWorkflow into one component by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16739 <https://github.com/galaxyproject/galaxy/pull/16739>`_
* Don't copy collection elements in ``test_dataset_collection_hide_originals`` by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16747 <https://github.com/galaxyproject/galaxy/pull/16747>`_
* Drop legacy server-side search by `@jdavcs <https://github.com/jdavcs>`_ in `#16755 <https://github.com/galaxyproject/galaxy/pull/16755>`_
* Migrate a part of the jobs API to Fast API by `@heisner-tillman <https://github.com/heisner-tillman>`_ in `#16778 <https://github.com/galaxyproject/galaxy/pull/16778>`_
* Replace file_name property with get_file_name function by `@SergeyYakubov <https://github.com/SergeyYakubov>`_ in `#16783 <https://github.com/galaxyproject/galaxy/pull/16783>`_
* Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by `@sveinugu <https://github.com/sveinugu>`_ in `#16795 <https://github.com/galaxyproject/galaxy/pull/16795>`_
* Galaxy help forum integration by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#16798 <https://github.com/galaxyproject/galaxy/pull/16798>`_
* SQLAlchemy 2.0 upgrades (part 4) by `@jdavcs <https://github.com/jdavcs>`_ in `#16852 <https://github.com/galaxyproject/galaxy/pull/16852>`_
* Vueify Visualizations Grid by `@guerler <https://github.com/guerler>`_ in `#16892 <https://github.com/galaxyproject/galaxy/pull/16892>`_
* Change `api/tool_panel` to `api/tool_panels/...` by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16928 <https://github.com/galaxyproject/galaxy/pull/16928>`_
* Remove "Create Workflow" form and allow workflow creation in editor by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#16938 <https://github.com/galaxyproject/galaxy/pull/16938>`_
* Update API tool_panels route conditions by `@dannon <https://github.com/dannon>`_ in `#16991 <https://github.com/galaxyproject/galaxy/pull/16991>`_
* Fix invocation report to target correct workflow version. by `@jmchilton <https://github.com/jmchilton>`_ in `#17008 <https://github.com/galaxyproject/galaxy/pull/17008>`_
* Upgrade job manager's index_query method to SA2.0 by `@jdavcs <https://github.com/jdavcs>`_ in `#17020 <https://github.com/galaxyproject/galaxy/pull/17020>`_
* Require name for workflows on save, set default to Unnamed Workflow by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#17038 <https://github.com/galaxyproject/galaxy/pull/17038>`_
* Migrate groups API to fastAPI by `@arash77 <https://github.com/arash77>`_ in `#17051 <https://github.com/galaxyproject/galaxy/pull/17051>`_
* Migrate ItemTags API to FastAPI by `@arash77 <https://github.com/arash77>`_ in `#17064 <https://github.com/galaxyproject/galaxy/pull/17064>`_
=============
Other changes
=============
* Merge 23.1 into dev by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16534 <https://github.com/galaxyproject/galaxy/pull/16534>`_
* Fix succces typo by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17481 <https://github.com/galaxyproject/galaxy/pull/17481>`_
-------------------
23.1.4 (2024-01-04)
packages/web_apps/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-web-apps
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
@@ -75,4 +75,4 @@ python_requires = >=3.7
[options.packages.find]
exclude =
tests*
tool_shed.test*
tool_shed.test*
packages/web_framework/HISTORY.rst
+15 -3
View File
@@ -3,11 +3,23 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
=========
Bug fixes
=========
* Ruff and flake8 fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#16884 <https://github.com/galaxyproject/galaxy/pull/16884>`_
* Provide working routes.url_for every ASGI request by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17497 <https://github.com/galaxyproject/galaxy/pull/17497>`_
============
Enhancements
============
* Drop (admin only) userskeys controller by `@dannon <https://github.com/dannon>`_ in `#16318 <https://github.com/galaxyproject/galaxy/pull/16318>`_
-------------------
23.1.4 (2024-01-04)
packages/web_framework/setup.cfg
+2 -2
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-web-framework
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True
@@ -48,4 +48,4 @@ python_requires = >=3.7
[options.packages.find]
exclude =
tests*
tests*
packages/web_stack/HISTORY.rst
+8 -3
View File
@@ -3,11 +3,16 @@ History
.. to_doc
---------
23.2.dev0
---------
-------------------
23.2.1 (2024-02-21)
-------------------
============
Enhancements
============
* Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16536 <https://github.com/galaxyproject/galaxy/pull/16536>`_
-------------------
23.1.4 (2024-01-04)
packages/web_stack/setup.cfg
+1 -1
View File
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
long_description_content_type = text/x-rst
name = galaxy-web-stack
url = https://github.com/galaxyproject/galaxy
version = 23.2.dev0
version = 23.2.1
[options]
include_package_data = True