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Merge pull request #3221 from hmenager/xsd_add_edam_elements

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Add EDAM topic(s) and operation(s) elements to XSD file.
This commit is contained in:
John Chilton
2016-11-28 15:46:32 -05:00
committed by GitHub
parent 5b4a0689d5 8109a711cf
commit c8ea393ccb
1 changed files with 52 additions and 0 deletions
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lib/galaxy/tools/xsd/galaxy.xsd
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@@ -45,6 +45,8 @@ A ``data_source`` tool contains a few more relevant attributes.
<xs:all>
<!-- TODO: Move the anyType further into macros def... -->
<xs:element name="macros" type="xs:anyType" minOccurs="0"/>
<xs:element name="edam_topics" type="EdamTopics" minOccurs="0"/>
<xs:element name="edam_operations" type="EdamOperations" minOccurs="0"/>
<xs:element name="requirements" type="Requirements" minOccurs="0"/>
<xs:element name="description" type="xs:string" minOccurs="0">
<xs:annotation gxdocs:best_practices="tool-descriptions">
@@ -5127,4 +5129,54 @@ and ``contains``.</xs:documentation>
<xs:enumeration value="no"/>
</xs:restriction>
</xs:simpleType>
<xs:complexType name="EdamTopics">
<xs:annotation>
<xs:documentation xml:lang="en"><![CDATA[
Container tag set for the ``<edam_topic>`` tags.
A tool can have any number of EDAM topic references.
```xml
<!-- Example: this tool is about 'Statistics and probability' (http://edamontology.org/topic_2269) -->
<edam_topics>
<edam_topic>topic_2269</edam_topic>
</edam_topics>
```
]]></xs:documentation>
</xs:annotation>
<xs:sequence>
<xs:element name="edam_topic" minOccurs="0" maxOccurs="unbounded">
<xs:simpleType>
<xs:restriction base="xs:string">
<xs:pattern value="topic_[0-9]{4}"></xs:pattern>
</xs:restriction>
</xs:simpleType>
</xs:element>
</xs:sequence>
</xs:complexType>
<xs:complexType name="EdamOperations">
<xs:annotation>
<xs:documentation xml:lang="en"><![CDATA[
Container tag set for the ``<edam_operation>`` tags.
A tool can have any number of EDAM operation references.
```xml
<!-- Example: this tool performs a 'Conversion' operation (http://edamontology.org/operation_3434) -->
<edam_operations>
<edam_operation>operation_3434</edam_operation>
</edam_operations>
```
]]></xs:documentation>
</xs:annotation>
<xs:sequence>
<xs:element name="edam_operation" minOccurs="0" maxOccurs="unbounded">
<xs:simpleType>
<xs:restriction base="xs:string">
<xs:pattern value="operation_[0-9]{4}"></xs:pattern>
</xs:restriction>
</xs:simpleType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:schema>