mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Move the tool shed's administrative grids out of the admin controller and into ~/tool_shed/grids.
This commit is contained in:
Greg Von Kuster
@@ -1,12 +1,9 @@
|
||||
from galaxy.web.base.controller import BaseUIController
|
||||
from galaxy import web, util
|
||||
from galaxy.web.base.controllers.admin import Admin
|
||||
from galaxy.webapps.tool_shed import model
|
||||
from galaxy.model.orm import and_
|
||||
from galaxy.web.framework.helpers import time_ago, grids
|
||||
from galaxy.util import inflector
|
||||
import tool_shed.util.shed_util_common as suc
|
||||
from tool_shed.grids.repository_grids import RepositoryGrid, CategoryGrid
|
||||
import tool_shed.grids.admin_grids as admin_grids
|
||||
|
||||
from galaxy import eggs
|
||||
eggs.require( 'mercurial' )
|
||||
@@ -16,440 +13,15 @@ import logging
|
||||
|
||||
log = logging.getLogger( __name__ )
|
||||
|
||||
class UserGrid( grids.Grid ):
|
||||
# TODO: move this to an admin_common controller since it is virtually the same in the galaxy webapp.
|
||||
class UserLoginColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, user ):
|
||||
return user.email
|
||||
class UserNameColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, user ):
|
||||
if user.username:
|
||||
return user.username
|
||||
return 'not set'
|
||||
class GroupsColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, user ):
|
||||
if user.groups:
|
||||
return len( user.groups )
|
||||
return 0
|
||||
class RolesColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, user ):
|
||||
if user.roles:
|
||||
return len( user.roles )
|
||||
return 0
|
||||
class ExternalColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, user ):
|
||||
if user.external:
|
||||
return 'yes'
|
||||
return 'no'
|
||||
class LastLoginColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, user ):
|
||||
if user.galaxy_sessions:
|
||||
return self.format( user.galaxy_sessions[ 0 ].update_time )
|
||||
return 'never'
|
||||
class StatusColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, user ):
|
||||
if user.purged:
|
||||
return "purged"
|
||||
elif user.deleted:
|
||||
return "deleted"
|
||||
return ""
|
||||
class EmailColumn( grids.GridColumn ):
|
||||
def filter( self, trans, user, query, column_filter ):
|
||||
if column_filter == 'All':
|
||||
return query
|
||||
return query.filter( and_( model.Tool.table.c.user_id == model.User.table.c.id,
|
||||
model.User.table.c.email == column_filter ) )
|
||||
title = "Users"
|
||||
model_class = model.User
|
||||
template='/admin/user/grid.mako'
|
||||
default_sort_key = "email"
|
||||
columns = [
|
||||
UserLoginColumn( "Email",
|
||||
key="email",
|
||||
link=( lambda item: dict( operation="information", id=item.id ) ),
|
||||
attach_popup=True,
|
||||
filterable="advanced" ),
|
||||
UserNameColumn( "User Name",
|
||||
key="username",
|
||||
attach_popup=False,
|
||||
filterable="advanced" ),
|
||||
GroupsColumn( "Groups", attach_popup=False ),
|
||||
RolesColumn( "Roles", attach_popup=False ),
|
||||
ExternalColumn( "External", attach_popup=False ),
|
||||
LastLoginColumn( "Last Login", format=time_ago ),
|
||||
StatusColumn( "Status", attach_popup=False ),
|
||||
# Columns that are valid for filtering but are not visible.
|
||||
EmailColumn( "Email",
|
||||
key="email",
|
||||
visible=False )
|
||||
]
|
||||
columns.append( grids.MulticolFilterColumn( "Search",
|
||||
cols_to_filter=[ columns[0], columns[1] ],
|
||||
key="free-text-search",
|
||||
visible=False,
|
||||
filterable="standard" ) )
|
||||
global_actions = [
|
||||
grids.GridAction( "Create new user",
|
||||
dict( controller='admin', action='users', operation='create' ) )
|
||||
]
|
||||
operations = [
|
||||
grids.GridOperation( "Manage Roles and Groups",
|
||||
condition=( lambda item: not item.deleted ),
|
||||
allow_multiple=False,
|
||||
url_args=dict( action="manage_roles_and_groups_for_user" ) ),
|
||||
grids.GridOperation( "Reset Password",
|
||||
condition=( lambda item: not item.deleted ),
|
||||
allow_multiple=True,
|
||||
allow_popup=False,
|
||||
url_args=dict( action="reset_user_password" ) )
|
||||
]
|
||||
standard_filters = [
|
||||
grids.GridColumnFilter( "Active", args=dict( deleted=False ) ),
|
||||
grids.GridColumnFilter( "Deleted", args=dict( deleted=True, purged=False ) ),
|
||||
grids.GridColumnFilter( "Purged", args=dict( purged=True ) ),
|
||||
grids.GridColumnFilter( "All", args=dict( deleted='All' ) )
|
||||
]
|
||||
num_rows_per_page = 50
|
||||
preserve_state = False
|
||||
use_paging = True
|
||||
def get_current_item( self, trans, **kwargs ):
|
||||
return trans.user
|
||||
|
||||
class RoleGrid( grids.Grid ):
|
||||
# TODO: move this to an admin_common controller since it is virtually the same in the galaxy webapp.
|
||||
class NameColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, role ):
|
||||
return role.name
|
||||
class DescriptionColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, role ):
|
||||
if role.description:
|
||||
return role.description
|
||||
return ''
|
||||
class TypeColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, role ):
|
||||
return role.type
|
||||
class StatusColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, role ):
|
||||
if role.deleted:
|
||||
return "deleted"
|
||||
return ""
|
||||
class GroupsColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, role ):
|
||||
if role.groups:
|
||||
return len( role.groups )
|
||||
return 0
|
||||
class UsersColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, role ):
|
||||
if role.users:
|
||||
return len( role.users )
|
||||
return 0
|
||||
title = "Roles"
|
||||
model_class = model.Role
|
||||
template='/admin/dataset_security/role/grid.mako'
|
||||
default_sort_key = "name"
|
||||
columns = [
|
||||
NameColumn( "Name",
|
||||
key="name",
|
||||
link=( lambda item: dict( operation="Manage users and groups", id=item.id ) ),
|
||||
attach_popup=True,
|
||||
filterable="advanced" ),
|
||||
DescriptionColumn( "Description",
|
||||
key='description',
|
||||
attach_popup=False,
|
||||
filterable="advanced" ),
|
||||
TypeColumn( "Type",
|
||||
key='type',
|
||||
attach_popup=False,
|
||||
filterable="advanced" ),
|
||||
GroupsColumn( "Groups", attach_popup=False ),
|
||||
UsersColumn( "Users", attach_popup=False ),
|
||||
StatusColumn( "Status", attach_popup=False ),
|
||||
# Columns that are valid for filtering but are not visible.
|
||||
grids.DeletedColumn( "Deleted",
|
||||
key="deleted",
|
||||
visible=False,
|
||||
filterable="advanced" )
|
||||
]
|
||||
columns.append( grids.MulticolFilterColumn( "Search",
|
||||
cols_to_filter=[ columns[0], columns[1], columns[2] ],
|
||||
key="free-text-search",
|
||||
visible=False,
|
||||
filterable="standard" ) )
|
||||
global_actions = [
|
||||
grids.GridAction( "Add new role",
|
||||
dict( controller='admin', action='roles', operation='create' ) )
|
||||
]
|
||||
operations = [ grids.GridOperation( "Rename",
|
||||
condition=( lambda item: not item.deleted ),
|
||||
allow_multiple=False,
|
||||
url_args=dict( action="rename_role" ) ),
|
||||
grids.GridOperation( "Delete",
|
||||
condition=( lambda item: not item.deleted ),
|
||||
allow_multiple=True,
|
||||
url_args=dict( action="mark_role_deleted" ) ),
|
||||
grids.GridOperation( "Undelete",
|
||||
condition=( lambda item: item.deleted ),
|
||||
allow_multiple=True,
|
||||
url_args=dict( action="undelete_role" ) ),
|
||||
grids.GridOperation( "Purge",
|
||||
condition=( lambda item: item.deleted ),
|
||||
allow_multiple=True,
|
||||
url_args=dict( action="purge_role" ) ) ]
|
||||
standard_filters = [
|
||||
grids.GridColumnFilter( "Active", args=dict( deleted=False ) ),
|
||||
grids.GridColumnFilter( "Deleted", args=dict( deleted=True ) ),
|
||||
grids.GridColumnFilter( "All", args=dict( deleted='All' ) )
|
||||
]
|
||||
num_rows_per_page = 50
|
||||
preserve_state = False
|
||||
use_paging = True
|
||||
def apply_query_filter( self, trans, query, **kwd ):
|
||||
return query.filter( model.Role.type != model.Role.types.PRIVATE )
|
||||
|
||||
class GroupGrid( grids.Grid ):
|
||||
# TODO: move this to an admin_common controller since it is virtually the same in the galaxy webapp.
|
||||
class NameColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, group ):
|
||||
return group.name
|
||||
class StatusColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, group ):
|
||||
if group.deleted:
|
||||
return "deleted"
|
||||
return ""
|
||||
class RolesColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, group ):
|
||||
if group.roles:
|
||||
return len( group.roles )
|
||||
return 0
|
||||
class UsersColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, group ):
|
||||
if group.members:
|
||||
return len( group.members )
|
||||
return 0
|
||||
title = "Groups"
|
||||
model_class = model.Group
|
||||
template='/admin/dataset_security/group/grid.mako'
|
||||
default_sort_key = "name"
|
||||
columns = [
|
||||
NameColumn( "Name",
|
||||
link=( lambda item: dict( operation="Manage users and roles", id=item.id ) ),
|
||||
attach_popup=True ),
|
||||
UsersColumn( "Users", attach_popup=False ),
|
||||
RolesColumn( "Roles", attach_popup=False ),
|
||||
StatusColumn( "Status", attach_popup=False ),
|
||||
# Columns that are valid for filtering but are not visible.
|
||||
grids.DeletedColumn( "Deleted",
|
||||
key="deleted",
|
||||
visible=False,
|
||||
filterable="advanced" )
|
||||
]
|
||||
columns.append( grids.MulticolFilterColumn( "Search",
|
||||
cols_to_filter=[ columns[0], columns[1], columns[2] ],
|
||||
key="free-text-search",
|
||||
visible=False,
|
||||
filterable="standard" ) )
|
||||
global_actions = [
|
||||
grids.GridAction( "Add new group",
|
||||
dict( controller='admin', action='groups', operation='create' ) )
|
||||
]
|
||||
operations = [ grids.GridOperation( "Rename",
|
||||
condition=( lambda item: not item.deleted ),
|
||||
allow_multiple=False,
|
||||
url_args=dict( action="rename_group" ) ),
|
||||
grids.GridOperation( "Delete",
|
||||
condition=( lambda item: not item.deleted ),
|
||||
allow_multiple=True,
|
||||
url_args=dict( action="mark_group_deleted" ) ),
|
||||
grids.GridOperation( "Undelete",
|
||||
condition=( lambda item: item.deleted ),
|
||||
allow_multiple=True,
|
||||
url_args=dict( action="undelete_group" ) ),
|
||||
grids.GridOperation( "Purge",
|
||||
condition=( lambda item: item.deleted ),
|
||||
allow_multiple=True,
|
||||
url_args=dict( action="purge_group" ) ) ]
|
||||
standard_filters = [
|
||||
grids.GridColumnFilter( "Active", args=dict( deleted=False ) ),
|
||||
grids.GridColumnFilter( "Deleted", args=dict( deleted=True ) ),
|
||||
grids.GridColumnFilter( "All", args=dict( deleted='All' ) )
|
||||
]
|
||||
num_rows_per_page = 50
|
||||
preserve_state = False
|
||||
use_paging = True
|
||||
|
||||
class ManageCategoryGrid( CategoryGrid ):
|
||||
columns = [ col for col in CategoryGrid.columns ]
|
||||
# Override the NameColumn to include an Edit link
|
||||
columns[ 0 ] = CategoryGrid.NameColumn( "Name",
|
||||
key="Category.name",
|
||||
link=( lambda item: dict( operation="Edit", id=item.id ) ),
|
||||
model_class=model.Category,
|
||||
attach_popup=False )
|
||||
global_actions = [
|
||||
grids.GridAction( "Add new category",
|
||||
dict( controller='admin', action='manage_categories', operation='create' ) )
|
||||
]
|
||||
|
||||
class AdminRepositoryGrid( RepositoryGrid ):
|
||||
class DeletedColumn( grids.BooleanColumn ):
|
||||
def get_value( self, trans, grid, repository ):
|
||||
if repository.deleted:
|
||||
return 'yes'
|
||||
return ''
|
||||
columns = [ RepositoryGrid.NameColumn( "Name",
|
||||
key="name",
|
||||
link=( lambda item: dict( operation="view_or_manage_repository", id=item.id ) ),
|
||||
attach_popup=True ),
|
||||
RepositoryGrid.UserColumn( "Owner",
|
||||
model_class=model.User,
|
||||
link=( lambda item: dict( operation="repositories_by_user", id=item.id ) ),
|
||||
attach_popup=False,
|
||||
key="User.username" ),
|
||||
RepositoryGrid.DeprecatedColumn( "Deprecated", key="deprecated", attach_popup=False ),
|
||||
# Columns that are valid for filtering but are not visible.
|
||||
DeletedColumn( "Deleted", key="deleted", attach_popup=False ) ]
|
||||
columns.append( grids.MulticolFilterColumn( "Search repository name",
|
||||
cols_to_filter=[ columns[0] ],
|
||||
key="free-text-search",
|
||||
visible=False,
|
||||
filterable="standard" ) )
|
||||
operations = [ operation for operation in RepositoryGrid.operations ]
|
||||
operations.append( grids.GridOperation( "Delete",
|
||||
allow_multiple=False,
|
||||
condition=( lambda item: not item.deleted ),
|
||||
async_compatible=False ) )
|
||||
operations.append( grids.GridOperation( "Undelete",
|
||||
allow_multiple=False,
|
||||
condition=( lambda item: item.deleted ),
|
||||
async_compatible=False ) )
|
||||
standard_filters = []
|
||||
default_filter = {}
|
||||
def build_initial_query( self, trans, **kwd ):
|
||||
return trans.sa_session.query( model.Repository ) \
|
||||
.join( model.User.table )
|
||||
|
||||
class RepositoryMetadataGrid( grids.Grid ):
|
||||
class IdColumn( grids.IntegerColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
return repository_metadata.id
|
||||
class NameColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
return repository_metadata.repository.name
|
||||
class OwnerColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
return repository_metadata.repository.user.username
|
||||
class RevisionColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
repository = repository_metadata.repository
|
||||
repo = hg.repository( suc.get_configured_ui(), repository.repo_path( trans.app ) )
|
||||
ctx = suc.get_changectx_for_changeset( repo, repository_metadata.changeset_revision )
|
||||
return "%s:%s" % ( str( ctx.rev() ), repository_metadata.changeset_revision )
|
||||
class ToolsColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
tools_str = '0'
|
||||
if repository_metadata:
|
||||
metadata = repository_metadata.metadata
|
||||
if metadata:
|
||||
if 'tools' in metadata:
|
||||
# We used to display the following, but grid was too cluttered.
|
||||
#for tool_metadata_dict in metadata[ 'tools' ]:
|
||||
# tools_str += '%s <b>%s</b><br/>' % ( tool_metadata_dict[ 'id' ], tool_metadata_dict[ 'version' ] )
|
||||
return '%d' % len( metadata[ 'tools' ] )
|
||||
return tools_str
|
||||
class DatatypesColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
datatypes_str = '0'
|
||||
if repository_metadata:
|
||||
metadata = repository_metadata.metadata
|
||||
if metadata:
|
||||
if 'datatypes' in metadata:
|
||||
# We used to display the following, but grid was too cluttered.
|
||||
#for datatype_metadata_dict in metadata[ 'datatypes' ]:
|
||||
# datatypes_str += '%s<br/>' % datatype_metadata_dict[ 'extension' ]
|
||||
return '%d' % len( metadata[ 'datatypes' ] )
|
||||
return datatypes_str
|
||||
class WorkflowsColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
workflows_str = '0'
|
||||
if repository_metadata:
|
||||
metadata = repository_metadata.metadata
|
||||
if metadata:
|
||||
if 'workflows' in metadata:
|
||||
# We used to display the following, but grid was too cluttered.
|
||||
#workflows_str += '<b>Workflows:</b><br/>'
|
||||
# metadata[ 'workflows' ] is a list of tuples where each contained tuple is
|
||||
# [ <relative path to the .ga file in the repository>, <exported workflow dict> ]
|
||||
#workflow_tups = metadata[ 'workflows' ]
|
||||
#workflow_metadata_dicts = [ workflow_tup[1] for workflow_tup in workflow_tups ]
|
||||
#for workflow_metadata_dict in workflow_metadata_dicts:
|
||||
# workflows_str += '%s<br/>' % workflow_metadata_dict[ 'name' ]
|
||||
return '%d' % len( metadata[ 'workflows' ] )
|
||||
return workflows_str
|
||||
class DeletedColumn( grids.BooleanColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
if repository_metadata.repository.deleted:
|
||||
return 'yes'
|
||||
return ''
|
||||
class DeprecatedColumn( grids.BooleanColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
if repository_metadata.repository.deprecated:
|
||||
return 'yes'
|
||||
return ''
|
||||
class MaliciousColumn( grids.BooleanColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
if repository_metadata.malicious:
|
||||
return 'yes'
|
||||
return ''
|
||||
# Grid definition
|
||||
title = "Repository Metadata"
|
||||
model_class = model.RepositoryMetadata
|
||||
template='/webapps/tool_shed/repository/grid.mako'
|
||||
default_sort_key = "name"
|
||||
columns = [
|
||||
IdColumn( "Id",
|
||||
visible=False,
|
||||
attach_popup=False ),
|
||||
NameColumn( "Name",
|
||||
key="name",
|
||||
model_class=model.Repository,
|
||||
link=( lambda item: dict( operation="view_or_manage_repository_revision", id=item.id ) ),
|
||||
attach_popup=True ),
|
||||
OwnerColumn( "Owner", attach_popup=False ),
|
||||
RevisionColumn( "Revision", attach_popup=False ),
|
||||
ToolsColumn( "Tools", attach_popup=False ),
|
||||
DatatypesColumn( "Datatypes", attach_popup=False ),
|
||||
WorkflowsColumn( "Workflows", attach_popup=False ),
|
||||
DeletedColumn( "Deleted", attach_popup=False ),
|
||||
DeprecatedColumn( "Deprecated", attach_popup=False ),
|
||||
MaliciousColumn( "Malicious", attach_popup=False )
|
||||
]
|
||||
columns.append( grids.MulticolFilterColumn( "Search repository name",
|
||||
cols_to_filter=[ columns[1] ],
|
||||
key="free-text-search",
|
||||
visible=False,
|
||||
filterable="standard" ) )
|
||||
operations = [ grids.GridOperation( "Delete",
|
||||
allow_multiple=False,
|
||||
allow_popup=True,
|
||||
async_compatible=False,
|
||||
confirm="Repository metadata records cannot be recovered after they are deleted. Click OK to delete the selected items." ) ]
|
||||
standard_filters = []
|
||||
default_filter = {}
|
||||
num_rows_per_page = 50
|
||||
preserve_state = False
|
||||
use_paging = True
|
||||
def build_initial_query( self, trans, **kwd ):
|
||||
return trans.sa_session.query( model.RepositoryMetadata ) \
|
||||
.join( model.Repository.table )
|
||||
|
||||
class AdminController( BaseUIController, Admin ):
|
||||
|
||||
user_list_grid = UserGrid()
|
||||
role_list_grid = RoleGrid()
|
||||
group_list_grid = GroupGrid()
|
||||
manage_category_grid = ManageCategoryGrid()
|
||||
repository_grid = AdminRepositoryGrid()
|
||||
repository_metadata_grid = RepositoryMetadataGrid()
|
||||
user_list_grid = admin_grids.UserGrid()
|
||||
role_list_grid = admin_grids.RoleGrid()
|
||||
group_list_grid = admin_grids.GroupGrid()
|
||||
manage_category_grid = admin_grids.ManageCategoryGrid()
|
||||
repository_grid = admin_grids.AdminRepositoryGrid()
|
||||
repository_metadata_grid = admin_grids.RepositoryMetadataGrid()
|
||||
|
||||
@web.expose
|
||||
@web.require_admin
|
||||
|
||||
@@ -0,0 +1,435 @@
|
||||
import os, logging
|
||||
from galaxy.web.framework.helpers import time_ago, grids
|
||||
from galaxy.webapps.tool_shed import model
|
||||
from galaxy.model.orm import and_
|
||||
import tool_shed.util.shed_util_common as suc
|
||||
from tool_shed.grids.repository_grids import RepositoryGrid, CategoryGrid
|
||||
|
||||
log = logging.getLogger( __name__ )
|
||||
|
||||
|
||||
class UserGrid( grids.Grid ):
|
||||
# TODO: move this to an admin_common controller since it is virtually the same in the galaxy webapp.
|
||||
class UserLoginColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, user ):
|
||||
return user.email
|
||||
class UserNameColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, user ):
|
||||
if user.username:
|
||||
return user.username
|
||||
return 'not set'
|
||||
class GroupsColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, user ):
|
||||
if user.groups:
|
||||
return len( user.groups )
|
||||
return 0
|
||||
class RolesColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, user ):
|
||||
if user.roles:
|
||||
return len( user.roles )
|
||||
return 0
|
||||
class ExternalColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, user ):
|
||||
if user.external:
|
||||
return 'yes'
|
||||
return 'no'
|
||||
class LastLoginColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, user ):
|
||||
if user.galaxy_sessions:
|
||||
return self.format( user.galaxy_sessions[ 0 ].update_time )
|
||||
return 'never'
|
||||
class StatusColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, user ):
|
||||
if user.purged:
|
||||
return "purged"
|
||||
elif user.deleted:
|
||||
return "deleted"
|
||||
return ""
|
||||
class EmailColumn( grids.GridColumn ):
|
||||
def filter( self, trans, user, query, column_filter ):
|
||||
if column_filter == 'All':
|
||||
return query
|
||||
return query.filter( and_( model.Tool.table.c.user_id == model.User.table.c.id,
|
||||
model.User.table.c.email == column_filter ) )
|
||||
title = "Users"
|
||||
model_class = model.User
|
||||
template='/admin/user/grid.mako'
|
||||
default_sort_key = "email"
|
||||
columns = [
|
||||
UserLoginColumn( "Email",
|
||||
key="email",
|
||||
link=( lambda item: dict( operation="information", id=item.id ) ),
|
||||
attach_popup=True,
|
||||
filterable="advanced" ),
|
||||
UserNameColumn( "User Name",
|
||||
key="username",
|
||||
attach_popup=False,
|
||||
filterable="advanced" ),
|
||||
GroupsColumn( "Groups", attach_popup=False ),
|
||||
RolesColumn( "Roles", attach_popup=False ),
|
||||
ExternalColumn( "External", attach_popup=False ),
|
||||
LastLoginColumn( "Last Login", format=time_ago ),
|
||||
StatusColumn( "Status", attach_popup=False ),
|
||||
# Columns that are valid for filtering but are not visible.
|
||||
EmailColumn( "Email",
|
||||
key="email",
|
||||
visible=False )
|
||||
]
|
||||
columns.append( grids.MulticolFilterColumn( "Search",
|
||||
cols_to_filter=[ columns[0], columns[1] ],
|
||||
key="free-text-search",
|
||||
visible=False,
|
||||
filterable="standard" ) )
|
||||
global_actions = [
|
||||
grids.GridAction( "Create new user",
|
||||
dict( controller='admin', action='users', operation='create' ) )
|
||||
]
|
||||
operations = [
|
||||
grids.GridOperation( "Manage Roles and Groups",
|
||||
condition=( lambda item: not item.deleted ),
|
||||
allow_multiple=False,
|
||||
url_args=dict( action="manage_roles_and_groups_for_user" ) ),
|
||||
grids.GridOperation( "Reset Password",
|
||||
condition=( lambda item: not item.deleted ),
|
||||
allow_multiple=True,
|
||||
allow_popup=False,
|
||||
url_args=dict( action="reset_user_password" ) )
|
||||
]
|
||||
standard_filters = [
|
||||
grids.GridColumnFilter( "Active", args=dict( deleted=False ) ),
|
||||
grids.GridColumnFilter( "Deleted", args=dict( deleted=True, purged=False ) ),
|
||||
grids.GridColumnFilter( "Purged", args=dict( purged=True ) ),
|
||||
grids.GridColumnFilter( "All", args=dict( deleted='All' ) )
|
||||
]
|
||||
num_rows_per_page = 50
|
||||
preserve_state = False
|
||||
use_paging = True
|
||||
def get_current_item( self, trans, **kwargs ):
|
||||
return trans.user
|
||||
|
||||
class RoleGrid( grids.Grid ):
|
||||
# TODO: move this to an admin_common controller since it is virtually the same in the galaxy webapp.
|
||||
class NameColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, role ):
|
||||
return role.name
|
||||
class DescriptionColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, role ):
|
||||
if role.description:
|
||||
return role.description
|
||||
return ''
|
||||
class TypeColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, role ):
|
||||
return role.type
|
||||
class StatusColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, role ):
|
||||
if role.deleted:
|
||||
return "deleted"
|
||||
return ""
|
||||
class GroupsColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, role ):
|
||||
if role.groups:
|
||||
return len( role.groups )
|
||||
return 0
|
||||
class UsersColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, role ):
|
||||
if role.users:
|
||||
return len( role.users )
|
||||
return 0
|
||||
title = "Roles"
|
||||
model_class = model.Role
|
||||
template='/admin/dataset_security/role/grid.mako'
|
||||
default_sort_key = "name"
|
||||
columns = [
|
||||
NameColumn( "Name",
|
||||
key="name",
|
||||
link=( lambda item: dict( operation="Manage users and groups", id=item.id ) ),
|
||||
attach_popup=True,
|
||||
filterable="advanced" ),
|
||||
DescriptionColumn( "Description",
|
||||
key='description',
|
||||
attach_popup=False,
|
||||
filterable="advanced" ),
|
||||
TypeColumn( "Type",
|
||||
key='type',
|
||||
attach_popup=False,
|
||||
filterable="advanced" ),
|
||||
GroupsColumn( "Groups", attach_popup=False ),
|
||||
UsersColumn( "Users", attach_popup=False ),
|
||||
StatusColumn( "Status", attach_popup=False ),
|
||||
# Columns that are valid for filtering but are not visible.
|
||||
grids.DeletedColumn( "Deleted",
|
||||
key="deleted",
|
||||
visible=False,
|
||||
filterable="advanced" )
|
||||
]
|
||||
columns.append( grids.MulticolFilterColumn( "Search",
|
||||
cols_to_filter=[ columns[0], columns[1], columns[2] ],
|
||||
key="free-text-search",
|
||||
visible=False,
|
||||
filterable="standard" ) )
|
||||
global_actions = [
|
||||
grids.GridAction( "Add new role",
|
||||
dict( controller='admin', action='roles', operation='create' ) )
|
||||
]
|
||||
operations = [ grids.GridOperation( "Rename",
|
||||
condition=( lambda item: not item.deleted ),
|
||||
allow_multiple=False,
|
||||
url_args=dict( action="rename_role" ) ),
|
||||
grids.GridOperation( "Delete",
|
||||
condition=( lambda item: not item.deleted ),
|
||||
allow_multiple=True,
|
||||
url_args=dict( action="mark_role_deleted" ) ),
|
||||
grids.GridOperation( "Undelete",
|
||||
condition=( lambda item: item.deleted ),
|
||||
allow_multiple=True,
|
||||
url_args=dict( action="undelete_role" ) ),
|
||||
grids.GridOperation( "Purge",
|
||||
condition=( lambda item: item.deleted ),
|
||||
allow_multiple=True,
|
||||
url_args=dict( action="purge_role" ) ) ]
|
||||
standard_filters = [
|
||||
grids.GridColumnFilter( "Active", args=dict( deleted=False ) ),
|
||||
grids.GridColumnFilter( "Deleted", args=dict( deleted=True ) ),
|
||||
grids.GridColumnFilter( "All", args=dict( deleted='All' ) )
|
||||
]
|
||||
num_rows_per_page = 50
|
||||
preserve_state = False
|
||||
use_paging = True
|
||||
def apply_query_filter( self, trans, query, **kwd ):
|
||||
return query.filter( model.Role.type != model.Role.types.PRIVATE )
|
||||
|
||||
class GroupGrid( grids.Grid ):
|
||||
# TODO: move this to an admin_common controller since it is virtually the same in the galaxy webapp.
|
||||
class NameColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, group ):
|
||||
return group.name
|
||||
class StatusColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, group ):
|
||||
if group.deleted:
|
||||
return "deleted"
|
||||
return ""
|
||||
class RolesColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, group ):
|
||||
if group.roles:
|
||||
return len( group.roles )
|
||||
return 0
|
||||
class UsersColumn( grids.GridColumn ):
|
||||
def get_value( self, trans, grid, group ):
|
||||
if group.members:
|
||||
return len( group.members )
|
||||
return 0
|
||||
title = "Groups"
|
||||
model_class = model.Group
|
||||
template='/admin/dataset_security/group/grid.mako'
|
||||
default_sort_key = "name"
|
||||
columns = [
|
||||
NameColumn( "Name",
|
||||
link=( lambda item: dict( operation="Manage users and roles", id=item.id ) ),
|
||||
attach_popup=True ),
|
||||
UsersColumn( "Users", attach_popup=False ),
|
||||
RolesColumn( "Roles", attach_popup=False ),
|
||||
StatusColumn( "Status", attach_popup=False ),
|
||||
# Columns that are valid for filtering but are not visible.
|
||||
grids.DeletedColumn( "Deleted",
|
||||
key="deleted",
|
||||
visible=False,
|
||||
filterable="advanced" )
|
||||
]
|
||||
columns.append( grids.MulticolFilterColumn( "Search",
|
||||
cols_to_filter=[ columns[0], columns[1], columns[2] ],
|
||||
key="free-text-search",
|
||||
visible=False,
|
||||
filterable="standard" ) )
|
||||
global_actions = [
|
||||
grids.GridAction( "Add new group",
|
||||
dict( controller='admin', action='groups', operation='create' ) )
|
||||
]
|
||||
operations = [ grids.GridOperation( "Rename",
|
||||
condition=( lambda item: not item.deleted ),
|
||||
allow_multiple=False,
|
||||
url_args=dict( action="rename_group" ) ),
|
||||
grids.GridOperation( "Delete",
|
||||
condition=( lambda item: not item.deleted ),
|
||||
allow_multiple=True,
|
||||
url_args=dict( action="mark_group_deleted" ) ),
|
||||
grids.GridOperation( "Undelete",
|
||||
condition=( lambda item: item.deleted ),
|
||||
allow_multiple=True,
|
||||
url_args=dict( action="undelete_group" ) ),
|
||||
grids.GridOperation( "Purge",
|
||||
condition=( lambda item: item.deleted ),
|
||||
allow_multiple=True,
|
||||
url_args=dict( action="purge_group" ) ) ]
|
||||
standard_filters = [
|
||||
grids.GridColumnFilter( "Active", args=dict( deleted=False ) ),
|
||||
grids.GridColumnFilter( "Deleted", args=dict( deleted=True ) ),
|
||||
grids.GridColumnFilter( "All", args=dict( deleted='All' ) )
|
||||
]
|
||||
num_rows_per_page = 50
|
||||
preserve_state = False
|
||||
use_paging = True
|
||||
|
||||
class ManageCategoryGrid( CategoryGrid ):
|
||||
columns = [ col for col in CategoryGrid.columns ]
|
||||
# Override the NameColumn to include an Edit link
|
||||
columns[ 0 ] = CategoryGrid.NameColumn( "Name",
|
||||
key="Category.name",
|
||||
link=( lambda item: dict( operation="Edit", id=item.id ) ),
|
||||
model_class=model.Category,
|
||||
attach_popup=False )
|
||||
global_actions = [
|
||||
grids.GridAction( "Add new category",
|
||||
dict( controller='admin', action='manage_categories', operation='create' ) )
|
||||
]
|
||||
|
||||
class AdminRepositoryGrid( RepositoryGrid ):
|
||||
class DeletedColumn( grids.BooleanColumn ):
|
||||
def get_value( self, trans, grid, repository ):
|
||||
if repository.deleted:
|
||||
return 'yes'
|
||||
return ''
|
||||
columns = [ RepositoryGrid.NameColumn( "Name",
|
||||
key="name",
|
||||
link=( lambda item: dict( operation="view_or_manage_repository", id=item.id ) ),
|
||||
attach_popup=True ),
|
||||
RepositoryGrid.UserColumn( "Owner",
|
||||
model_class=model.User,
|
||||
link=( lambda item: dict( operation="repositories_by_user", id=item.id ) ),
|
||||
attach_popup=False,
|
||||
key="User.username" ),
|
||||
RepositoryGrid.DeprecatedColumn( "Deprecated", key="deprecated", attach_popup=False ),
|
||||
# Columns that are valid for filtering but are not visible.
|
||||
DeletedColumn( "Deleted", key="deleted", attach_popup=False ) ]
|
||||
columns.append( grids.MulticolFilterColumn( "Search repository name",
|
||||
cols_to_filter=[ columns[0] ],
|
||||
key="free-text-search",
|
||||
visible=False,
|
||||
filterable="standard" ) )
|
||||
operations = [ operation for operation in RepositoryGrid.operations ]
|
||||
operations.append( grids.GridOperation( "Delete",
|
||||
allow_multiple=False,
|
||||
condition=( lambda item: not item.deleted ),
|
||||
async_compatible=False ) )
|
||||
operations.append( grids.GridOperation( "Undelete",
|
||||
allow_multiple=False,
|
||||
condition=( lambda item: item.deleted ),
|
||||
async_compatible=False ) )
|
||||
standard_filters = []
|
||||
default_filter = {}
|
||||
def build_initial_query( self, trans, **kwd ):
|
||||
return trans.sa_session.query( model.Repository ) \
|
||||
.join( model.User.table )
|
||||
|
||||
class RepositoryMetadataGrid( grids.Grid ):
|
||||
class IdColumn( grids.IntegerColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
return repository_metadata.id
|
||||
class NameColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
return repository_metadata.repository.name
|
||||
class OwnerColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
return repository_metadata.repository.user.username
|
||||
class RevisionColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
repository = repository_metadata.repository
|
||||
repo = hg.repository( suc.get_configured_ui(), repository.repo_path( trans.app ) )
|
||||
ctx = suc.get_changectx_for_changeset( repo, repository_metadata.changeset_revision )
|
||||
return "%s:%s" % ( str( ctx.rev() ), repository_metadata.changeset_revision )
|
||||
class ToolsColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
tools_str = '0'
|
||||
if repository_metadata:
|
||||
metadata = repository_metadata.metadata
|
||||
if metadata:
|
||||
if 'tools' in metadata:
|
||||
# We used to display the following, but grid was too cluttered.
|
||||
#for tool_metadata_dict in metadata[ 'tools' ]:
|
||||
# tools_str += '%s <b>%s</b><br/>' % ( tool_metadata_dict[ 'id' ], tool_metadata_dict[ 'version' ] )
|
||||
return '%d' % len( metadata[ 'tools' ] )
|
||||
return tools_str
|
||||
class DatatypesColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
datatypes_str = '0'
|
||||
if repository_metadata:
|
||||
metadata = repository_metadata.metadata
|
||||
if metadata:
|
||||
if 'datatypes' in metadata:
|
||||
# We used to display the following, but grid was too cluttered.
|
||||
#for datatype_metadata_dict in metadata[ 'datatypes' ]:
|
||||
# datatypes_str += '%s<br/>' % datatype_metadata_dict[ 'extension' ]
|
||||
return '%d' % len( metadata[ 'datatypes' ] )
|
||||
return datatypes_str
|
||||
class WorkflowsColumn( grids.TextColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
workflows_str = '0'
|
||||
if repository_metadata:
|
||||
metadata = repository_metadata.metadata
|
||||
if metadata:
|
||||
if 'workflows' in metadata:
|
||||
# We used to display the following, but grid was too cluttered.
|
||||
#workflows_str += '<b>Workflows:</b><br/>'
|
||||
# metadata[ 'workflows' ] is a list of tuples where each contained tuple is
|
||||
# [ <relative path to the .ga file in the repository>, <exported workflow dict> ]
|
||||
#workflow_tups = metadata[ 'workflows' ]
|
||||
#workflow_metadata_dicts = [ workflow_tup[1] for workflow_tup in workflow_tups ]
|
||||
#for workflow_metadata_dict in workflow_metadata_dicts:
|
||||
# workflows_str += '%s<br/>' % workflow_metadata_dict[ 'name' ]
|
||||
return '%d' % len( metadata[ 'workflows' ] )
|
||||
return workflows_str
|
||||
class DeletedColumn( grids.BooleanColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
if repository_metadata.repository.deleted:
|
||||
return 'yes'
|
||||
return ''
|
||||
class DeprecatedColumn( grids.BooleanColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
if repository_metadata.repository.deprecated:
|
||||
return 'yes'
|
||||
return ''
|
||||
class MaliciousColumn( grids.BooleanColumn ):
|
||||
def get_value( self, trans, grid, repository_metadata ):
|
||||
if repository_metadata.malicious:
|
||||
return 'yes'
|
||||
return ''
|
||||
# Grid definition
|
||||
title = "Repository Metadata"
|
||||
model_class = model.RepositoryMetadata
|
||||
template='/webapps/tool_shed/repository/grid.mako'
|
||||
default_sort_key = "name"
|
||||
columns = [
|
||||
IdColumn( "Id",
|
||||
visible=False,
|
||||
attach_popup=False ),
|
||||
NameColumn( "Name",
|
||||
key="name",
|
||||
model_class=model.Repository,
|
||||
link=( lambda item: dict( operation="view_or_manage_repository_revision", id=item.id ) ),
|
||||
attach_popup=True ),
|
||||
OwnerColumn( "Owner", attach_popup=False ),
|
||||
RevisionColumn( "Revision", attach_popup=False ),
|
||||
ToolsColumn( "Tools", attach_popup=False ),
|
||||
DatatypesColumn( "Datatypes", attach_popup=False ),
|
||||
WorkflowsColumn( "Workflows", attach_popup=False ),
|
||||
DeletedColumn( "Deleted", attach_popup=False ),
|
||||
DeprecatedColumn( "Deprecated", attach_popup=False ),
|
||||
MaliciousColumn( "Malicious", attach_popup=False )
|
||||
]
|
||||
columns.append( grids.MulticolFilterColumn( "Search repository name",
|
||||
cols_to_filter=[ columns[1] ],
|
||||
key="free-text-search",
|
||||
visible=False,
|
||||
filterable="standard" ) )
|
||||
operations = [ grids.GridOperation( "Delete",
|
||||
allow_multiple=False,
|
||||
allow_popup=True,
|
||||
async_compatible=False,
|
||||
confirm="Repository metadata records cannot be recovered after they are deleted. Click OK to delete the selected items." ) ]
|
||||
standard_filters = []
|
||||
default_filter = {}
|
||||
num_rows_per_page = 50
|
||||
preserve_state = False
|
||||
use_paging = True
|
||||
def build_initial_query( self, trans, **kwd ):
|
||||
return trans.sa_session.query( model.RepositoryMetadata ) \
|
||||
.join( model.Repository.table )
|
||||
@@ -10,6 +10,8 @@ from galaxy import eggs
|
||||
eggs.require('markupsafe')
|
||||
from markupsafe import escape as escape_html
|
||||
|
||||
log = logging.getLogger( __name__ )
|
||||
|
||||
class CategoryGrid( grids.Grid ):
|
||||
|
||||
|
||||
|
||||
Reference in New Issue
Block a user