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Upgraded genomespaceclient to newer version
This fixes issue reported in: https://github.com/galaxyproject/usegalaxy-playbook/issues/100 Also related to PR: https://github.com/galaxyproject/galaxy/pull/6660
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@@ -69,7 +69,7 @@ svgwrite = "*"
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pyparsing = "*"
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"Fabric3" = "*"
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paramiko = "*"
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python-genomespaceclient = "<1.0"
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python-genomespaceclient = "<2.0"
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social_auth_core = {version = "==1.5.0", extras = ['openidconnect']}
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[requires]
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@@ -93,7 +93,7 @@ pyperclip==1.6.4
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pysam==0.14.1
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python-cinderclient==2.0.1
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python-dateutil==2.7.3
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python-genomespaceclient==0.2
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python-genomespaceclient==1.0.0
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python-glanceclient==2.6.0; python_version != '3.3.*'
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python-keystoneclient==3.10.0; python_version != '3.3.*'
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python-lzo==1.12
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@@ -148,7 +148,7 @@ def determine_file_type(input_url, output_filename, metadata, json_params, sniff
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Determine the Galaxy data format for this file.
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"""
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# Use genomespace metadata to map type
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file_format = metadata.dataFormat.name if metadata.dataFormat else None
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file_format = metadata.data_format.name if metadata.data_format else None
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file_type = get_galaxy_ext_from_genomespace_format(file_format)
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# If genomespace metadata has no identifiable format, attempt to sniff type
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